Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02736 ATGACTTACATAGAGTCCTCTTGCCAAGGAACAAGGTTCCCTAATCTGTGCATACGTTGCCTAGCCAGATTTTCAAATTCCACCATTGATGGCCCTCAGCACTTGGCCCATCTTGCCCTTTCGGTGAGCCTCTTAAGGGCACTAAAAACTAGGGCATACTTGTTAAAAGTGGCCAAGGAACTTGAAGAGTTCAAGAATGATAGAGTGTACCTTACTGTGCAAGATTGTGTAATTCAACTGAATGATAGTGTTGACCAACTTTGCCAAGCCATCAAAGAGCTCCGCAGGATAAAGAAAAGCACCATCATAGATGACAACTTCTTGTGGCACATAAGTAATGTTGAGACATGGGTAAGCACTGCCTTAACAGATGCTAGCTATTGTGTTCAATCGTTCCCTGGAACAAATATGAGTAAGAGGACTGCTACTATAAAGTTTAAGGCACAAAATGTTGCAGAGGTCACTAGTAATGCACTGAATTTATTCCACAGATATGCTTCTAGTTACCATGTAGCAGCTAGAGCCACCATGAAACCCTAA 540 0.4222 MTYIESSCQGTRFPNLCIRCLARFSNSTIDGPQHLAHLALSVSLLRALKTRAYLLKVAKELEEFKNDRVYLTVQDCVIQLNDSVDQLCQAIKELRRIKKSTIIDDNFLWHISNVETWVSTALTDASYCVQSFPGTNMSKRTATIKFKAQNVAEVTSNALNLFHRYASSYHVAARATMKP 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02736 179 FunFam Pectinesterase inhibitor 3 1 166 - -
Vian1g02736 179 SMART PMEI_2 1 161 IPR006501 GO:0004857
Vian1g02736 179 Pfam Plant invertase/pectin methylesterase inhibitor 3 161 IPR006501 GO:0004857
Vian1g02736 179 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 3 165 IPR035513 -
Vian1g02736 179 PANTHER PECTINESTERASE INHIBITOR-LIKE 3 161 - -
Vian1g02736 179 NCBIfam pectinesterase inhibitor domain 2 164 IPR006501 GO:0004857
Vian1g02736 179 CDD PMEI-like_3 6 167 - -
Vian1g02736 179 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 165 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02736 Vian-Chr1 41851289 41851828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02736 4 162 Carbohydrate Esterase AT3G49220 28.221 1.70e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02736 - - pvu:PHAVU_002G180000g 288.885