Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02728 ATGGAACACTCGGAGAGTAGCACCAGCAGCAACACTCAGAGAGAAAATTCCCGTGTCGGAAGTTATGTACTTGGCCAGACTCTGGGCAAAGGAAACTTCTCCATCGTGAAGCTTGCACGTTGCCTTAAAACCGGAAACAATGTGGCCATCAAAATTTTCGATAAGCATGCGGTTCTCGCCAAGCAAATCCAGGACGAGTTGCTGAAGATGGAGCTAAACTTATTCAAAATGAAAATGATTAGACACCCTAATGTGGTGCATGTGCTTGAGGAGATATATTCAAAAACACAGTTCTTTATTGTAACGGAGCATGTAACTGGTGGGGAACTGTTTGATAAAATTACAAACACCGGGAGAATGGAAGAACCCGAAGCAAGAAAATATTTTCAGCAGCTTATACATGCTGTGGATTACTGTCACGGTATAGGTGTTTCCCATAAAAACTTAAAGCCGGAGAATCTGTTGGTGGATGCTGATGGAGTACTTAAAATAATAGATTTTGGCGTAAATATGCTGTCCCAACAAGTTGGATCAGATGGATTGCTTCACACAGCACGTGGTCTGCCACATTATATCGCCCCAGAGATGTTTAAGGCTGATTTCACATTTCCTTCATTTTTTTCTCCAAGTGTAAAGAGACTAATTGAGAGAATCCTTGATCCCAATCCAGCTAGACGGATTGCAATTAAAGATATCTTGGAGGATGAATGGTTCAAGAACGAGCCTCAATCCCAACAATTAAGTGCAAGTTTTCATGAAGATTCACAGGGTCCTGGAGAACCGGATTCACAGGACCCTGTAGAACCTGTTCCCAAGAATGCATTTCAGATAATGCTTGCCTATCTTGGCTTCAATCTTGTAGGAAATCTGCTTAACAAGGTACTTGGTAAAAGGGAAACAAGTTTCGTATCCAAATGCTCCCCAGATGAGATAATTTCAGGGATTGAACGAACTATAGCTTCTCTGGGTTTTAATGTTAAGGAGAGAGAGTACAACTTGAAGATTAAATTGGAAAAGGATGAACATAAAGGTCATCTATCAATAGCTACTAAGATCTTTAAGGTGAATCCTTCCCTTTTCAAGGTTGAGGTTCGAAAGAACGGAAAAAATACCCTTGATTTTGAAGAGTTCTACAGGGATCTATGTGCTGGGCTGCGTGATATCATTTGGGAAGAGAAATCTGCCAACTCAAAAAGAGATGGTGCAAGTACATCAACTGCAACATAA 1227 0.4091 MEHSESSTSSNTQRENSRVGSYVLGQTLGKGNFSIVKLARCLKTGNNVAIKIFDKHAVLAKQIQDELLKMELNLFKMKMIRHPNVVHVLEEIYSKTQFFIVTEHVTGGELFDKITNTGRMEEPEARKYFQQLIHAVDYCHGIGVSHKNLKPENLLVDADGVLKIIDFGVNMLSQQVGSDGLLHTARGLPHYIAPEMFKADFTFPSFFSPSVKRLIERILDPNPARRIAIKDILEDEWFKNEPQSQQLSASFHEDSQGPGEPDSQDPVEPVPKNAFQIMLAYLGFNLVGNLLNKVLGKRETSFVSKCSPDEIISGIERTIASLGFNVKEREYNLKIKLEKDEHKGHLSIATKIFKVNPSLFKVEVRKNGKNTLDFEEFYRDLCAGLRDIIWEEKSANSKRDGASTSTAT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02728 408 Pfam Protein kinase domain 22 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02728 408 SUPERFAMILY Protein kinase-like (PK-like) 17 244 IPR011009 -
Vian1g02728 408 Gene3D Transferase(Phosphotransferase) domain 1 200 263 - -
Vian1g02728 408 Gene3D Transferase(Phosphotransferase) domain 1 12 199 - -
Vian1g02728 408 CDD CIPK_C 273 387 - -
Vian1g02728 408 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 197 371 - -
Vian1g02728 408 MobiDBLite consensus disorder prediction 244 269 - -
Vian1g02728 408 ProSiteProfiles Protein kinase domain profile. 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02728 408 Pfam NAF domain 273 327 IPR004041 GO:0007165
Vian1g02728 408 Gene3D Kinase associated domain 1, KA1 267 391 - -
Vian1g02728 408 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vian1g02728 408 FunFam Maternal embryonic leucine zipper kinase 14 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02728 Vian-Chr1 41654387 41657656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02728 12 395 CBL-interacting serine-threonine protein kinases AT1G01140 42.404 9.25e-112 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian1g02728 Pkinase 3.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02728 - - vum:124837064 741.88