Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02722 ATGAATAGCGACCCAGACCTCTACTTATTGAAGAGGCGCCCAAATAACTGTGATTCTTCGCCGGTCGCCACTCGCAAGACGCAAGTCACAATGCCTAAGCAGATCCACGAGATAAAGGATTTCCTTCTGACGGCGCGGAGGAAGGATGCGAGGTCGGTGAAAATCAAGAGGAGCAGGGATGTGGTTAAGTTCAAGGTTCGATGCTCCAAGTATTTGTACACGCTTTGCGTCTTTGACCCTGAGAAAGCCGATAAATTGAAGCAATCTCTTCCTCCTGGTTAG 282 0.4894 MNSDPDLYLLKRRPNNCDSSPVATRKTQVTMPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDPEKADKLKQSLPPG 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02722 93 Gene3D - 31 93 IPR038464 -
Vian1g02722 93 Pfam Ribosomal L38e protein family 32 93 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vian1g02722 93 PANTHER 60S RIBOSOMAL PROTEIN L38 31 93 IPR002675 GO:0003735|GO:0005840|GO:0006412
Vian1g02722 93 FunFam 60S ribosomal protein L38 31 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02722 Vian-Chr1 41462223 41462609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02722 31 93 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 93.651 2.27e-39 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02722 K02923 - pop:7474400 130.183