Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02721 ATGAAACTTTCATCAGCAGGTTTTAGTCCTCCACCCCAAGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATACCAAATTATCCAAGCTTACCGCCTCAGCTTATATGTCAACTTCATAACGTGACTATGCATGCAGATAATGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTCTGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCGGAGTTAGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCTAAAAGGCATCTACTTACAACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCCAGTGATAGTATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCGACTAACAGCCGTTTCACCATCTTTTATAACCCAAGAGCTAGCCCATCGGAATTTGTTATACCTTTAGCAAAGTATGTTAAAGCTGTATATCATACTCGTGTGTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCTAGTATTCGTCGATACATGGGCACAATAACTGGAATTAGTGACCTGGACTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCCCGGGTTTCTTTATGGGAAATTGAGCCATTAACTACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCAATGGCTTGAAGGATGATGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACTCAGACAGAGGTCTTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAACTATCAAACAGACGTGTACCAAGCAATGGCTGCCGCTGCACTTCAGGATATGTGGAGTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTTCAATTTCAGCAACCACAGAACTTCCTGAATAGGACTTCTCCCACAGTGCAGACTCAGATCTTGCAGCAATCTCAATCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAGACTCTAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAACCAGCATCATCTTCTACAGCAGCAACAACAGCAGCAACAATCACAACAACCGCAGCAGCAACAACAGCAACTGCAGCAGCAACAAGTGATTGATCATCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCGCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTAACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAGGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCATGGGTTCCTGTTCAACCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCCTTCTGGGGCATCTCAATGTGTTCTGCCTCAAGTGGAACAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGAGAGTGTGCTATAGAAGGAAGCAGTGATCCGCAAAATCATATTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTATACCTTTCCAATCATCTAATTACCTGAACACCACAAGCACTGATTCTTCAATGAATCCTGGAATGGCACACAATATTGGTGAGTCGGGCTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTAAAGGTTTATAAGTCAGGGTCCTTTGGAAGATCATTGGATATTACAAAATTTACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTTGAGCTTCTTAACTCAGTCCCAATCCAAAGGCTCTCTAGTGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2745 0.4528 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADNETDEVYAQMTLQPLSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSIRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFNGLKDDDFGLNSSLMWLRDSDRGLPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWSSDPSKQHPTSLLQFQQPQNFLNRTSPTVQTQILQQSQSQQSFPNSQEIPHPSQSQAQTLTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQSQQPQQQQQQLQQQQVIDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPQDETSHLLNLPRTSWVPVQPSTAWPPSKRVAVDPLLPSGASQCVLPQVEQLGQPQSTMAQNAITLPPFPSRECAIEGSSDPQNHILFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTIPFQSSNYLNTTSTDSSMNPGMAHNIGESGFLQTPENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSSGVCDDYAGHEDPRSISTGITTVGSLNY 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02721 914 Gene3D - 291 363 - -
Vian1g02721 914 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vian1g02721 914 SMART B3_2 127 229 IPR003340 GO:0003677
Vian1g02721 914 ProSiteProfiles PB1 domain profile. 781 865 IPR000270 GO:0005515
Vian1g02721 914 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian1g02721 914 SUPERFAMILY CAD & PB1 domains 780 857 - -
Vian1g02721 914 FunFam Auxin response factor 291 363 - -
Vian1g02721 914 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vian1g02721 914 Gene3D - 125 228 IPR015300 -
Vian1g02721 914 FunFam Auxin response factor 125 229 - -
Vian1g02721 914 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 870 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian1g02721 914 MobiDBLite consensus disorder prediction 477 554 - -
Vian1g02721 914 FunFam Auxin response factor 777 870 - -
Vian1g02721 914 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vian1g02721 914 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vian1g02721 914 Gene3D - 778 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02721 Vian-Chr1 41355784 41363415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02721 1 483 B3 DNA Binding Superfamily AT1G30330 84.631 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian1g02721 B3 2.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02721 - - gmx:100777789 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02721 1 41355784 41363415 Vian1g02721 1 41355784 41363415 ECH