Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02713 ATGACTCTTCTCTCCAAAAGCATGGACAATGGTTGCTTCTCTTCGCCACGCCATGAGGCTTTTCCAGCTGGTCTGCGAGTTCTTGTTGTTGATGATGATCCAACATGGTTGAGGATCCTTGAAAAGATGCTCAAGAAGTGTTTGTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTGAAAAAACTTCGAGAAAGGAAAGATGCATATGACATAGTGATCAGCGATGTGAACATGCCTGACATGGATGGCTTCAAACTTCTTGAGCAAGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACCAGTAGAGTAATGAAAGGTGTCCAACATGGTGCATGTGATTATCTTCTCAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCACGTCTTTAGAAAAAGGATGCATGAAGCGAGAGATTTTGAAAGCCATGAGGGTTTTGAGGCCCTTCACTTGCTGATGAATGGATCAGATCAGTCCGATGATGGTAACATCTTTGCCGTAGAAGAAATTACCTCAATAAAGAAAAGAAAAGATGCAGATAGCAAGCACGATGACAAAGAATTTGGAGATCATTCTCCCACAAAGAAAGCTAGGGTAGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCCGTGAATCAAATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAGTGTTCCCTGGTTAACCAGAGAAAATGTTGCTAGTCACTTGCAGAAATACAGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCGTCAAGTGGAGTAAAGCATTCGGATTCTCCTTCAAAAGATCCAGGAAGTTTTAGTTTTCTAAACACTGCAAGCAACAAGCAACAAAGTGATGTTGTCATTGACAGCTTCAGTCATTCAGATGAAAGTTTACTACAGATGGATGCTCCAAGTCATGAAGGCGACCTCAAGAGAATCTTGTCAGAGCCTACAACCGAAAAAAGAAGATCTTCACCAAAAAGTTCACAGATGAGCCTCAATCAACCTTTTTCATCTGTAGAATCATCAGAAGCAAGCCATGCAATATTTGATTGCACCATACAAACACAGTACTCTTGGGGTGAGTTTCCAAAAGGACCACTCAAAGAAGAACAGAAGACAACTGTTCAATTAGAGGATAGCTTCAGCCAGTTGCCATTACACGGTACACGGCATCCCATTCAGGTTGATCAATCACAATCGATTGCTTCGATTAATTCTAATCCTTCTATAACAGAAGAAGAGGTTGCTCCCAGCTTAGACACCAAAACTTTATATGCTGGTTACAAGAGTGATTATGTGAGTCCTGTGAGTTCAATGGGAACTGTTGTTGACACCTTTCCTAAACAGTCCAAAAGCCTCATCCCTAATGATCAATCTCCAGAGCCCATTTTCACCTCAAATTTGGGATTGAAAACTGATGGATTTGATGTTGATTGCATTTCTGATCTGGATTTTTATCAAAGGAATCTATTATTGTGTGGTGATGCAGCTTCTGCACCTTTGGAAGAGGACCTGAATTTCTTTTTGCTGCAAACTGAATGGTACAACATGAATTTTGGGCAGCAGAATATAGATATATCAGAATGTTATGATCCAAGGCTTGTTGCTGAAGCCCCTGGCTACTTTTATGATTCTGCAGATTATTCATCCGTAGACCAAAGTCTATTCATAGCATGA 1737 0.4041 MTLLSKSMDNGCFSSPRHEAFPAGLRVLVVDDDPTWLRILEKMLKKCLYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEQVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFEALHLLMNGSDQSDDGNIFAVEEITSIKKRKDADSKHDDKEFGDHSPTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMSVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGVKHSDSPSKDPGSFSFLNTASNKQQSDVVIDSFSHSDESLLQMDAPSHEGDLKRILSEPTTEKRRSSPKSSQMSLNQPFSSVESSEASHAIFDCTIQTQYSWGEFPKGPLKEEQKTTVQLEDSFSQLPLHGTRHPIQVDQSQSIASINSNPSITEEEVAPSLDTKTLYAGYKSDYVSPVSSMGTVVDTFPKQSKSLIPNDQSPEPIFTSNLGLKTDGFDVDCISDLDFYQRNLLLCGDAASAPLEEDLNFFLLQTEWYNMNFGQQNIDISECYDPRLVAEAPGYFYDSADYSSVDQSLFIA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02713 578 MobiDBLite consensus disorder prediction 343 357 - -
Vian1g02713 578 ProSiteProfiles Response regulatory domain profile. 26 141 IPR001789 GO:0000160
Vian1g02713 578 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 313 IPR045279 GO:0009736
Vian1g02713 578 MobiDBLite consensus disorder prediction 319 357 - -
Vian1g02713 578 SUPERFAMILY CheY-like 24 152 IPR011006 -
Vian1g02713 578 MobiDBLite consensus disorder prediction 269 295 - -
Vian1g02713 578 SMART REC_2 25 137 IPR001789 GO:0000160
Vian1g02713 578 MobiDBLite consensus disorder prediction 319 342 - -
Vian1g02713 578 CDD REC_typeB_ARR-like 27 141 - -
Vian1g02713 578 NCBIfam myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Vian1g02713 578 Gene3D - 204 266 - -
Vian1g02713 578 Pfam Response regulator receiver domain 27 136 IPR001789 GO:0000160
Vian1g02713 578 SUPERFAMILY Homeodomain-like 205 264 IPR009057 -
Vian1g02713 578 FunFam Two-component response regulator 203 266 - -
Vian1g02713 578 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Vian1g02713 578 Gene3D - 25 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02713 Vian-Chr1 41092858 41097083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02713 19 273 Response Regulator Gene Family AT2G25180 53.731 3.67e-81 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian1g02713 Response_reg 1.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02713 K14491 - gmx:100778324 991.104