Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02708 ATGGTCGTTTTGGATGCTGTGCTGGGAACACTCAATGTGGCATTCCTTTATGCCATTTTGATATGGGTTTTGGTCGATAGCTTGAGACAAAGCAAGCGCAGCCGTGTTCCTGATGGGTGTTTCAAACGAGGACCAATGCTTATGGCTGCGTTCACTGTTCTATCCTGTGCTGTTATATCTGTTATGAACATGGTTCTTGCTTTTCACCAATACAGCTCCACGAAAGTAATAGGATTTAACTCTGTTTCATTGCCACTCAATTGGGTTTTGGCCACTGTTGTTTCGTTTTATTCAGTGAGGACCAGAGTGAGGGAGAATAAAAAATTCCCTCTTGTGCTCATACTGTGGTGGGTTTTCTCTTCTCTCGTGGATGTGCTCTCTCTGTCTGTAAGGGTGGTCAAAGATTTCGAAGTGTTGGACTTATGGTTTTTCTTGTCAGAGGATAACTTAGTTGCTTCGTTTTCCTTGCCTTTGTTGGTGGTTCTTTGTTTCAATGTGTGTAGAAGGGAGCGCAGTGATATGGAAGAGGGGTTGCTTCAGATCGAGGAGGAGTTTTCCATGGAGGAACACGATGAAGAGGCCTTCACTAATGCAAGTGTGTGGAACAAGCTTATCTTCCGTTGGTTGAACCCCATTTTCAAAACGGGTCGGGTTAAAAAGCTTGAACTTTCTCATATTCCTCCAGTTCCTTGTTCTGAATCCGCGGAAAGTGCTTCTTCCATGTTGGAAGGGTCACTTCGGAAACAGAAACTCGGAGAGGGCTCCTTGGCAAAAGCTATAGCCGATTCTGTATGGAAGTCTTTGGCCTTGAATGCAGTTTTAGCTGGTGTTAACACAGGTGCCTCTTATATAGGTCCCTTGTTGATCACAAATTTTGTGAATTTTTTACTGGGCAATAATGGTGATTCAAGCGTCCAATATGGATTGGTTCTTGCATTTGTTTTCTTCCTCGCCAAGACCGTGGAGTCACTGAGTCAAAGACAATGGTACTTTGGTGCTCAACAAATTGGAATCCGGGTGCGTGCAGCTCTTATGTCTCTAATTTATAGCAACTCCCTAACGATGAAGAGTGCTGGACCAACGCAAGGTAAAATCATCAATCTGATTAATGTTGATGTTGAAAGAATTGGGGACTTCTGCTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATCTTGTACATCAATCTGGGTTATACCCCTTCTTTTGCTGCATTTGGTGTCACCATTTTGGTCATGGTGTGTAACACACCTTTGGCGAATAGGCAAGAAAGTTTGCACTCCAAAATCATGGAAGCTAAGGACTCAAGAATCAAAATGACATCAGAGACTATGAAGAACATAAGAATTTTAAAATTGCATTCGTGGGAGACCTCATTCTTGCAGAAACTCCTCCAACTTAGGGAAACTGAGAGGGGGTGGCTGCAGAAATACCTCTACACATGCTCAGCAGTTGCAACACTATTCTGGACATCACCGACTTTAGTTTCTGTTGTTACCTTTGGTGCTTGTATCCTGGTGAAAACAGAACTAACAGCCGCTACAGTACTCTCAGCTTTAGCAACTTTTCGTATTTTGCAAGAACCAATCTATAACTTACCTGAGCTTATCTCCATGATCATTCAAACAAAAGTCTCCCTTGATCGAATCCAGGAGTTCCTCGAGGAAGAGGATCAAAACCAATTCCTAAATAGGCACACTTCAAAAAATTCATCAGTTGCTATTGAAATAAACCCTGGGGAATACGCATGGGAAACACACCATCAAACCCACAAGAAACCAACAATTCTAATTACAAGAAAGTTAGTGATAAAGAAAGGTCAGCAGGTAGCAGTTTGTGGGTCAGTGGGGTCTGGTAAATCAAGCTTGCTGTGCTGTATTCTTGGGGAGATTCCATTAGTATCTGGGGCTCTAACCAAAGTTTATGGGACTAGAAGTTATGTACCCCAAAGTCCTTGGATTCAGTCTGGAACCGTAAGAGAGAATATATTGTTTGGCAAGCAAATGAACAAGGAGTTTTATGAAGATGTTTTGGATGGCTGTGCTTTGAAGCAGGACATCAACATGTGGGGTGATGGAGATTTGAACCTGGTGGAGGAGAGAGGCATAAACTTGAGTGGTGGGCAGAAACAGCGGGTTCAATTGGCAAGGGCTGTTTATAATGATTCAGATATTTATTTCCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAACTCATTTGTTTAAGAAATGTCTCATGAAACTTTTATACGATAAAACGGTTGTTTATGCAACCCATCAACTGGAATTCTTGGAATCTGCAGACCTCATTTTGGTCATGAAAGATGGAAAAATAGTGGAGTCAGGAAGGTATAAAGATCTTATAGCATGTCCCAACTCTGAACTTGTTCAACAAATGGCCGCTCACCGAGAAACAGTACATCAAATAAACCCAAGCCAAGCAGAAGATTTTGCTAGCTACAGACCCTGCCCAAAAAATCAAATTGAAGTTACTCGAGAAAATGTTCAAGATATCATGGAAAATTGGAAGAGAAACAAAGAAGAGGAAAGAGAGACGGGTCGAGTAAAATGGAGTGTTTACTCAACTTTTGTCACATCTGCTTATAAAGGAGCACTTGTTCCAGTTATTCTTCTCTGCCAGATCTTCTTTCAAGTAATGCAAATTGGAAGCAATTATTGGATGTCATGGGCCACAGAGCAGAAGGGCAGGGTTAACAACAAGCAGCTAATGAAAATATTTGTTCTTCTATCTTCTGGGGGCACCATCTTCATACTGGGAAGGACTGTTTTAATGGCAGCTGTTGCTGTGGAAACTGCTCAACGCCTTTTTCACGGAATGATCACATCAGTTTTCCGGGCACCTGTCTCATTTTTTGACACCACACCTTCAAGCCGAATTCTGAGTAGGTCATCAACAGATCAAAGTACAGTTGACACAGACATACCATACAGATTAGCTGGACTAGTATTTGCACTGATACAGTTATTGAGTATCATTGTGCTAATGTCCCAAGTTGCCTGGCAAGTCATTCTCCTCTTTTTTGTGGTTTTTGCTATTTCCATCTGGTATCAGTCATATTACATCACAACAGCCAGGGAACTGGCCCGGATGGTTGGGATTCGAAAGGCTCCAATCTTGCATCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATCCGCTGTTTCAATCAAGAGCAACTATTCTTGACCAAGGTTAACGTTCTAATAGATGACTATTCTCGGGTAGCCTTTTACAATTTCGGCACCATGGAATGGTTGTCTGTACGAATCAATTTCCTCTTCAATTTGGTCTTCTATTTTGTTCTCGTCATCTTGGTTACTCTTCCAAGGTCTACCATTGATCCAAGCTTGGCGGGTCTCGTAGCTACGTACGGTTTGAACTTGAATGTCCTCCAGGCTTGGGTGATATGGAACCTTTGCAATGTTGAGAACAAAATGATATCAGTTGAGAGAATATTGCAGTTCTCTAACATACCAAGTGAAGCACCCTTAATTATTAAAGATTGCAGGCCTGAACAAGATTGGCCAAAGGAAGGAAATGTTGAACTACATAATCTTCATATACGGTATGATCCCGCTGCTCCTATGGTACTCAAAGGCGTCACCTGTGTCTTCCCAGGACAAAAGAAAATTGGTATAGTAGGCAGGACAGGGAGCGGAAAATCTACTCTTTTGCAAGCCCTCTTTCGAGTGGTGGAGCCTTTGGAAGGAAGTATACTAATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGTATAATTCCTCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACTAACTTGGATCCTCTAGAACAACATGCAGATCAAGAACTTTGGGAGGTTCTCAGAAAGTGCCATCTTGCTGAAATAGTAAGGCGGGATCCAAGACTTCTTGATGCACCAGTGGCGGAGAATGGAGAAAATTGGAGTGTTGGACAAAGGCAACTTGTTTGCCTTGCTAGGCTACTACTGAAGAAAAGAAGAATTTTGGTACTGGATGAAGCTACAGCATCCATTGACACGGCAACTGACAATTTAATTCAGAAGACAATTAGGGAAGAAACAAGTGGATGTACAGTCATTACAGTAGCACATAGAATTCCAACAGTTATTGACAATGATTTAGTTTTGGTCCTTGATGAAGGGACAATTGCAGAGTACGATAACCCTACTAAATTGCTGCAGAACAGTTCTTCTTCGTTCTCAAAGTTGGTTTCAGAATTTTTGAGGAGATCATCTCAAAAGTAA 4326 0.4191 MVVLDAVLGTLNVAFLYAILIWVLVDSLRQSKRSRVPDGCFKRGPMLMAAFTVLSCAVISVMNMVLAFHQYSSTKVIGFNSVSLPLNWVLATVVSFYSVRTRVRENKKFPLVLILWWVFSSLVDVLSLSVRVVKDFEVLDLWFFLSEDNLVASFSLPLLVVLCFNVCRRERSDMEEGLLQIEEEFSMEEHDEEAFTNASVWNKLIFRWLNPIFKTGRVKKLELSHIPPVPCSESAESASSMLEGSLRKQKLGEGSLAKAIADSVWKSLALNAVLAGVNTGASYIGPLLITNFVNFLLGNNGDSSVQYGLVLAFVFFLAKTVESLSQRQWYFGAQQIGIRVRAALMSLIYSNSLTMKSAGPTQGKIINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGYTPSFAAFGVTILVMVCNTPLANRQESLHSKIMEAKDSRIKMTSETMKNIRILKLHSWETSFLQKLLQLRETERGWLQKYLYTCSAVATLFWTSPTLVSVVTFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMIIQTKVSLDRIQEFLEEEDQNQFLNRHTSKNSSVAIEINPGEYAWETHHQTHKKPTILITRKLVIKKGQQVAVCGSVGSGKSSLLCCILGEIPLVSGALTKVYGTRSYVPQSPWIQSGTVRENILFGKQMNKEFYEDVLDGCALKQDINMWGDGDLNLVEERGINLSGGQKQRVQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMKLLYDKTVVYATHQLEFLESADLILVMKDGKIVESGRYKDLIACPNSELVQQMAAHRETVHQINPSQAEDFASYRPCPKNQIEVTRENVQDIMENWKRNKEEERETGRVKWSVYSTFVTSAYKGALVPVILLCQIFFQVMQIGSNYWMSWATEQKGRVNNKQLMKIFVLLSSGGTIFILGRTVLMAAVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIVLMSQVAWQVILLFFVVFAISIWYQSYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQLFLTKVNVLIDDYSRVAFYNFGTMEWLSVRINFLFNLVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSNIPSEAPLIIKDCRPEQDWPKEGNVELHNLHIRYDPAAPMVLKGVTCVFPGQKKIGIVGRTGSGKSTLLQALFRVVEPLEGSILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHADQELWEVLRKCHLAEIVRRDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGTIAEYDNPTKLLQNSSSSFSKLVSEFLRRSSQK 1441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02708 1441 Gene3D - 1181 1434 IPR027417 -
Vian1g02708 1441 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 885 1161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02708 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1198 1432 IPR003439 GO:0005524
Vian1g02708 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1192 1424 IPR027417 -
Vian1g02708 1441 Coils Coil 835 862 - -
Vian1g02708 1441 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 582 810 IPR003439 GO:0005524
Vian1g02708 1441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 800 IPR027417 -
Vian1g02708 1441 ProSitePatterns ABC transporters family signature. 712 726 IPR017871 GO:0005524|GO:0016887
Vian1g02708 1441 FunFam ABC transporter C family member 5 847 1179 - -
Vian1g02708 1441 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 269 549 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02708 1441 FunFam ABC transporter C family member 3 1181 1433 - -
Vian1g02708 1441 Pfam ABC transporter 609 739 IPR003439 GO:0005524
Vian1g02708 1441 CDD ABC_6TM_ABCC_D1 270 557 IPR044746 GO:0140359
Vian1g02708 1441 CDD ABCC_MRP_domain2 1196 1416 - -
Vian1g02708 1441 Gene3D ABC transporter type 1, transmembrane domain 256 567 IPR036640 GO:0005524|GO:0016020
Vian1g02708 1441 Gene3D ABC transporter type 1, transmembrane domain 847 1179 IPR036640 GO:0005524|GO:0016020
Vian1g02708 1441 SUPERFAMILY ABC transporter transmembrane region 264 564 IPR036640 GO:0005524|GO:0016020
Vian1g02708 1441 SUPERFAMILY ABC transporter transmembrane region 884 1180 IPR036640 GO:0005524|GO:0016020
Vian1g02708 1441 SMART AAA_5 613 795 IPR003593 GO:0016887
Vian1g02708 1441 SMART AAA_5 1224 1415 IPR003593 GO:0016887
Vian1g02708 1441 CDD ABCC_MRP_domain1 582 787 - -
Vian1g02708 1441 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 196 1432 - -
Vian1g02708 1441 CDD ABC_6TM_ABCC_D2 883 1173 IPR044726 GO:0140359
Vian1g02708 1441 Gene3D - 592 830 IPR027417 -
Vian1g02708 1441 FunFam ABC transporter C family member 10 253 565 - -
Vian1g02708 1441 FunFam Multidrug resistance-associated protein 4 567 827 - -
Vian1g02708 1441 Pfam ABC transporter transmembrane region 888 1125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02708 1441 Pfam ABC transporter transmembrane region 270 536 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g02708 1441 Pfam ABC transporter 1215 1363 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02708 Vian-Chr1 40931864 40937540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02708 609 832 Calmodulin-binding Proteins AT2G36910 29.461 2.95e-19 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02708 - - gmx:100809063 2416.73