Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02691 ATGAATGTTGCTGAGGTTGAAGAAAATCTAGTGGCTGCAACCGATGCTAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTACTGTCTGTATTTCCTTCTTTAGAAGCTGCCAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCGCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCTGATTCCGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCTCTATCTATTGGGTGTCAGGTTCAGGAGATTGTGCACGAGTTTGTGACAATAGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGGAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTCCACCAGGCTGCTGCTAGACTCGGAATTACATCTTCAAGAGCAGCTCTTGCCGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAAGAGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCTCCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGGCAGCTTTCAAAATTCAGTTGCTTTAATTTTAAACCAAATAGTGGTAGGAAATCAGGGCAGATGCCACTTCCACCTGAAGAGTTAAGGTGTCCTATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACGCAGCAGGAACTTTCACATCTTTGTTTAACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGTCCTCCTGAATCTCTTGACCTTAATTACTGGCAGTTATTATCAGAGTCTGAATCTTCAAGTTCAAAAGCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTTGAAGCGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAAGGGAACTGAAATTGTGTCTGCACAAGAGGAAGACATAGAGCAGTGTTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAATAATTGGAGTAAGCAATGTGAAGTGGTAGAACATTTAAGGTTGCTGCTGAGGGATGACGAGGAAGCCCGGATTTTGTTGGGGGCTAATGGGTTTGTCGAAGCACTTCTGCACTTCTTGCAATCAGCTGTGCATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAAGAGATGATTTCAAAAACTAGTTCTTATGGTTGTATTACCGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCGGACTCTGATGTTCAATGCAAGCAAGATGCTCTCCATTCTCTCTATAATCTTTCTACTATGGCCTCCAATATTCAACACCTCCTTTCATCTGGCATCATTAGTGGCTTACAGTTCCTTCTTGAAGGCGACACTGATTGCTTGTGGACAGAGAGATGCATAGCTGTTTTGATAAATTTAGCTGCTTCTGATGTTGGAAGGGAGGAAATTGTATCAACTCCTGGACTCATTAGTGCACTGGCTTCTATACTGGACACTGATGAGCTCTTGGAACAGGAGCAAGCAGTCACTTGTCTCCTAATTTTGTGCAATAGAAGTGAGGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTGTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTGCTGATTTGTCTATGCCTCCAGCTGAAATGAAACCGCTATGCAAGTCAATTTCAAGAAGAAAGTCTGGGAGAACTTTTAGCTTTTTCTGGAAAAGCAAGAGCTATTCTGTCTACCAGTGCTGA 2292 0.421 MNVAEVEENLVAATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCAECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPLSIGCQVQEIVHEFVTIEFALDPSEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAAARLGITSSRAALAERRALKKLLERARSEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNSGRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQELSHLCLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQLLSESESSSSKAVNSVSSCKLKGVEAVPLEESGISEESVEKGTEIVSAQEEDIEQCFSFLKVLTEGNNWSKQCEVVEHLRLLLRDDEEARILLGANGFVEALLHFLQSAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCITALYLNLSCLEEAKPMIGMSQAIQFLIQLLQSDSDVQCKQDALHSLYNLSTMASNIQHLLSSGIISGLQFLLEGDTDCLWTERCIAVLINLAASDVGREEIVSTPGLISALASILDTDELLEQEQAVTCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETADLSMPPAEMKPLCKSISRRKSGRTFSFFWKSKSYSVYQC 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02691 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Vian1g02691 763 SUPERFAMILY ARM repeat 426 704 IPR016024 -
Vian1g02691 763 Gene3D - 422 606 IPR011989 -
Vian1g02691 763 Coils Coil 175 195 - -
Vian1g02691 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Vian1g02691 763 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Vian1g02691 763 Coils Coil 87 107 - -
Vian1g02691 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Vian1g02691 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Vian1g02691 763 SUPERFAMILY RING/U-box 279 355 - -
Vian1g02691 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vian1g02691 763 PANTHER U BOX DOMAIN-CONTAINING 21 708 - -
Vian1g02691 763 SMART arm_5 539 580 IPR000225 GO:0005515
Vian1g02691 763 SMART arm_5 454 498 IPR000225 GO:0005515
Vian1g02691 763 CDD RING-Ubox_PUB 281 333 IPR045210 -
Vian1g02691 763 Gene3D - 607 726 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02691 Vian-Chr1 40562636 40566124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02691 1 762 U-box Gene Family AT1G24330 65.296 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02691 - - gmx:100794099 1309.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02691 1 40562636 40566124 Vian1g02691 1 40562636 40566124 ECH
Vian2g03173 2 52211070 52214695 Vian1g02691 1 40562636 40566124 PCT