Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02673 ATGGAGGACTTATCAGCACCCAAGAGCAAGATCCTGAAAAGTCCAGCACTTGCGCAGTACATCCTTGATACGAGTGCATATCCGAAAGAGCACGAGCAGTTGAAGCAACTCCGAGAGACAACAGTGCAGAAATATGGTTTCAAGAGTTTGATGAATGTGGCTGTGGATGAGGCACAATTCCTTTCTATTCTTCTAAAAATCATCAAGGCCGAGAAAACACTAGAAATTGGAGTTTTCACGGGTTATTCCCTTCTTTCTACTGCTCTGGCTCTTCCTCCTCATGCCAAGGTATAA 294 0.4422 MEDLSAPKSKILKSPALAQYILDTSAYPKEHEQLKQLRETTVQKYGFKSLMNVAVDEAQFLSILLKIIKAEKTLEIGVFTGYSLLSTALALPPHAKV 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02673 97 Pfam O-methyltransferase 23 96 IPR002935 GO:0008171
Vian1g02673 97 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 10 97 IPR002935 GO:0008171
Vian1g02673 97 Gene3D Vaccinia Virus protein VP39 4 97 IPR029063 -
Vian1g02673 97 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 14 97 IPR029063 -
Vian1g02673 97 PANTHER O-METHYLTRANSFERASE-RELATED 7 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02673 Vian-Chr1 39969930 39970302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02673 3 97 Monolignol Biosynthesis Gene Families AT1G67990 60.000 9.20e-36 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02673 K00588 K13272 gmx:100813350 134.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02673 1 39969930 39970302 Vian1g02673 1 39969930 39970302 ECH