Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02659 ATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGCTTGTGTCTGTCCTTTACCTTAACTGGTTTATTAGCAGTGGAATTATGGACACCAAGATGGGGTTTCCAGGTGGTGGTGGGGGTGGAAAGATGTGGCACAAATGGTGGGAGAAGATCTCTGGGCAGGGTTGCAAAATCCACCAACAGTACTACCAGTATATTGGCTCTAAGAAAGTGAAGAGAGCGTTGTGGAGGAAGCTTTTGCTGACATGGGTGGTGGGTTGGATTATAGTATCTTTGTGGATCTTGTGCTACTTGAGCTTGCAAGGTATTGAGAAGAGGAAAGAAACTCTGGCAAGCTTGTGTGATGAAAGGGCTAGGATGCTTCAGGATCAGTTCAACGTCAGTATGAACCATATCCAAGCCATGTCAATTCTGATCTCCACCTTTCACCATGCCAAGAACCCCTCAGCCATCGATCAGAAAACTTTTGCAAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGCGGTGTTGCATATGCTGTAAGGGTGCTCCATTCTGAAAGGGAACAGTTTGAAAAGCAACAAGGTTGGACTATCAAGAGGATGGATACTCTAGAGCAGAACCCGGTTCATAAGGATGATTACGCCCCAGAGGCATTGGAGCCATCCCCCGTCCAGGAAGAATATGCTCCTGTCATCTTTGCACAAGATACAATTGCACATGTGATTTCTGTTAATGTGCTCTCTGGAAAGGAAGACCGTGAAAATGTGCTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTCAAAACAAATCGTCTGGGGGTTATCCTGACATTTGCCGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGAATTCAAGCAACTGATGGGTATCTTGGGGGAGTCTTTGATGTTGAGTCATTGGTGGAGAAACTGCTTCAGCAACTTGCTAGCAAGCAAACCGTAATTGTTAATGTGTATGATACGACAAATCATACTCATCCAATTGCCATGTATGGTTCAAGTGAATCAGGGGATGAGTTCTATCATGTCAGCACTCTTAACTTCGGAGACCCTTTCAGGAAGCACGAGATGCACTGTAGGTTCAAGCAGAAACCACCATGGCCGTGGTTGGCAATAACTACGTCATTTGGTATTCTTGTTATTGCATTCCTTGTCGGATATATTTTCCATGCCACTGTGAATCATATTGCCAAAGTAGAAGATGATTGCCGTGAGATGATGGAACTTCGGGAACGAGCTGTGGCAGCTGATATTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCATGAGATCAGAACACCAATGAACGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGGACAGCACAAGAAAGTGGAAAGGCTCTGGTGTCACTAATAAACGAGGTTTTGGATCAAGCTAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTTGACATACGGTCAATTTTGGATGATGTTTTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCAGAATTTCTAATAGGTGATCCAGGAAGATTTCGACAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACTGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAATAGAGGTTGACAAAGAATCGAACTCAGAAAATACATTGAGTGGCTCCGTTGTAGCTGATAGTCGCAAGAGCTGGGAAGGATTCAGGGCTTTCAGTCAAGAGGGACCTCTTGGTTCCTTTTCGTCCCTCTCGAATGATCTTGTCAATTTGATTGTATCTGTTGAGGATACAGGTGAAGGCATTCCTCTTGAATCTCAGCCCCGCATCTTCACCCCATTCATGCAGGTAGGTCCATCCATTTCCAGAAAGCATGGAGGAACAGGTATTGGTCTAAGCATTAGCAAGTGTTTGGTTGGTCTCATGAATGGAGAAATTGGATTTGTGAGCATACCCAAGGTTGGATCCACATTCACTTTTACTGCCATATTCACCAATGGTATCCGCAGTTCAAACGAGTGTAAAATTCAGCAAACAAACAACCAACCTCGGTCTGCATCATCAGAATTTGAGGGGATGACTGCATTAATTATTGACCCAAGACCTGTTAGAGCAAAAGTGTCAAGATATCACATCCAACGGCTTGGCATTCATGTTGAGATGGTTTCTGATTTAAACCAAGGTTTGCTAACCATAAGCAATGGAAATATAGTTATTAATATGGTCTTGATTGAGCAGGAGGTTTGGGATAGAGATTTAGGCTTGTCATCTCACTTTGTCAATAATACAAGGAAAATTGATCATGGGGTTCCCCCAAAGCTGTTCATTCTTGTTAATTCTAGTAGTTCTTTTAAAGCTATTGTAAACTTGGGTGCTGATAATCCTACTGTCATTACTAAACCTCTTAGAGCAAGTATGCTTGCTGCCTCACTACAACGATCCATGGGTGTCCAAAACAAGGGAGCTCCCCGAAATAGAGAGCTCCAAAGTTTGTCTCTTCGCCATCTTCTTTGTGGCAGGAAAATTCTAATAGTAGATGACAATGCTGTGAACCGTGCTGTAGCAGCTGGTGCATTGAAAAAGTATGGAGCAGACGTGGTTTGTGTTAGCAGTGGGAAAGATGCCATCTCTTCCCTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGACGGTTTTGTAGCAACAAAGAAAATTAGGGAGATGGAGCAAAGTGTGAACAGAGAAGCATCAATGGATGAGAATGTTAGAAACTGGCATGTACCGATTTTAGCCATGACTGCAGATGTGATACAGGCTACACATGAAAAATGCCTAGGGGGTGGCATGGATGGGTACGTTTCAAAACCATTTGAAGCTGAACAGCTCTATAGAGAAGTCTCACGGTTTTTCCAGTCATCTTGA 3087 0.4325 MSLLHVVGFGLKVGHLLLVLCCWLVSVLYLNWFISSGIMDTKMGFPGGGGGGKMWHKWWEKISGQGCKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWIIVSLWILCYLSLQGIEKRKETLASLCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPVQEEYAPVIFAQDTIAHVISVNVLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDVESLVEKLLQQLASKQTVIVNVYDTTNHTHPIAMYGSSESGDEFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSFGILVIAFLVGYIFHATVNHIAKVEDDCREMMELRERAVAADIAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRSILDDVLSLFSEKSQGKGVELAVYVSDQVPEFLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKESNSENTLSGSVVADSRKSWEGFRAFSQEGPLGSFSSLSNDLVNLIVSVEDTGEGIPLESQPRIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKVGSTFTFTAIFTNGIRSSNECKIQQTNNQPRSASSEFEGMTALIIDPRPVRAKVSRYHIQRLGIHVEMVSDLNQGLLTISNGNIVINMVLIEQEVWDRDLGLSSHFVNNTRKIDHGVPPKLFILVNSSSSFKAIVNLGADNPTVITKPLRASMLAASLQRSMGVQNKGAPRNRELQSLSLRHLLCGRKILIVDDNAVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHQFDACFMDIQMPEMDGFVATKKIREMEQSVNREASMDENVRNWHVPILAMTADVIQATHEKCLGGGMDGYVSKPFEAEQLYREVSRFFQSS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02659 1028 CDD REC_hyHK_CKI1_RcsC-like 896 1021 - -
Vian1g02659 1028 SMART HisKA_10 445 510 IPR003661 GO:0000155|GO:0007165
Vian1g02659 1028 Gene3D - 890 1028 - -
Vian1g02659 1028 SUPERFAMILY CheY-like 893 1025 IPR011006 -
Vian1g02659 1028 ProSiteProfiles Response regulatory domain profile. 895 1025 IPR001789 GO:0000160
Vian1g02659 1028 Gene3D - 414 508 - -
Vian1g02659 1028 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Vian1g02659 1028 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Vian1g02659 1028 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Vian1g02659 1028 FunFam Histidine kinase 4 162 391 - -
Vian1g02659 1028 SMART REC_2 894 1021 IPR001789 GO:0000160
Vian1g02659 1028 Pfam His Kinase A (phospho-acceptor) domain 445 508 IPR003661 GO:0000155|GO:0007165
Vian1g02659 1028 ProSiteProfiles Histidine kinase domain profile. 452 720 IPR005467 -
Vian1g02659 1028 Gene3D - 509 720 IPR036890 -
Vian1g02659 1028 CDD HATPase_EvgS-ArcB-TorS-like 562 718 - -
Vian1g02659 1028 Pfam Response regulator receiver domain 896 1020 IPR001789 GO:0000160
Vian1g02659 1028 CDD HisKA 445 506 IPR003661 GO:0000155|GO:0007165
Vian1g02659 1028 ProSiteProfiles CHASE domain profile. 158 384 IPR006189 -
Vian1g02659 1028 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 557 716 IPR003594 -
Vian1g02659 1028 SUPERFAMILY CheY-like 744 870 IPR011006 -
Vian1g02659 1028 PANTHER TWO-COMPONENT HISTIDINE KINASE 100 1018 - -
Vian1g02659 1028 SMART HKATPase_4 557 720 IPR003594 -
Vian1g02659 1028 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 499 715 IPR036890 -
Vian1g02659 1028 Gene3D CHASE domain 162 391 IPR042240 -
Vian1g02659 1028 FunFam Histidine kinase 4 417 508 - -
Vian1g02659 1028 Pfam CHASE domain 161 357 IPR006189 -
Vian1g02659 1028 CDD PRTases_typeI 839 923 IPR000836 -
Vian1g02659 1028 ProSiteProfiles Response regulatory domain profile. 748 869 IPR001789 GO:0000160
Vian1g02659 1028 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 431 511 IPR036097 GO:0000155|GO:0007165
Vian1g02659 1028 SMART CHASE_2 158 359 IPR006189 -
Vian1g02659 1028 Gene3D - 110 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02659 Vian-Chr1 39555450 39561883 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02659 1 1027 Miscellaneous Gene Families AT1G27320 68.130 0.0 1409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g02659 CHASE 1.9e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02659 K14489 - gmx:100801546 1860.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02659 1 39555450 39561883 Vian1g02659 1 39555450 39561883 ECH