Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02650 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTTACCTTCGCTAAACGAAGGAACGGGCTTTTGAAGAAAGCTTACGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTACCAGAAATGTAACTATGGTGCGCCTGAGGCTAATGTATCTACACGGGAAGCCTTGGTAATGGAGTTAAGCAGTCAACAGGAGTACTTGAAGCTGAAGGCACGTTATGAGGCCCTGCAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGTCCTCTTAGCAGCAAAGAGCTTGAATCTCTTGAAAGGCAGTTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACGCAGTTCATGCTGGATCAGCTCTCTGAACTTCAGCGTAAGGAACACTTGCTAAGTGAGGCTAACAGGTCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCACTCCAACTGAATCCTGGAGTTGAAGACATGGGATATGGCAGGCATCCAGCTCAAGCTCAGGGTGACGCACTCTTTCAACCATTGGAGTGTGAGCCAACGTTACAAATTGGGTATCAGCCTGATCCAGTATCAGTGGTGACAGCAGGTCCAAGCATGAGCAATTACATGGCAGGATGGTTACCATAG 732 0.4686 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSTRTQFMLDQLSELQRKEHLLSEANRSLRQRLEGYQINPLQLNPGVEDMGYGRHPAQAQGDALFQPLECEPTLQIGYQPDPVSVVTAGPSMSNYMAGWLP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02650 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vian1g02650 243 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vian1g02650 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 Coils Coil 128 148 - -
Vian1g02650 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Vian1g02650 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 Pfam K-box region 93 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g02650 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Vian1g02650 243 FunFam MADS-box transcription factor 7 13 100 - -
Vian1g02650 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian1g02650 243 Coils Coil 154 174 - -
Vian1g02650 243 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian1g02650 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02650 Vian-Chr1 39237376 39244883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02650 1 243 MADS-box Gene Family AT1G24260 75.203 4.83e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian1g02650 K-box 7.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02650 - - gmx:100778931 460.299