Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02636 ATGCCTGCCCTCATCGATCTTAACAGCGCCACCGAGGACCATGAAACGCCATCGTCTCGCCCTTCCTCCGTCTGCCTCGAACTCTGGCATGCCTGCGCGGGTCCTATGATCTCCTTGCCCAAGAAAGGAACACTTGTCGTGTACTTCCCTCAAGGACACTTAGAACAACACCTTCACGATTTTCCGCTTCCTGCTTCTGCTAACATCCCTTCCCATCTCTTCTGTCGCGTTCTCGATGTCAAGCTCCATGCTGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTGGTGTTGGTTCCTAAAAGTGAGCAAGTGCATCAGAAGTTGCGGGAAGCGGAAATTGATGCTGATGGTGAGGAGGAGGATGCTGAAGCTGTGATGAAGTCCACCACACCCCACATGTTCTGCAAGACTTTGACAGCTTCTGATACTAGCACCCACGGTGGATTTTCTGTGCCTCGTCGTGCTGCGGAAGATTGCTTTCCACCTCTGGAATACAGTCAACAGAGACCTTCGCAGGAGCTTGTGGCGAAGGATCTGCATGGTCAAGAATGGAGGTTTCGACATATTTATAGGGGGCAACCACGACGACACTTGCTTACCACTGGGTGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGCGAGGATGGAGAACTAAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGCAGTGCAATTTCAACTTTTGCTGCCGAGCAATTGAATCTTAGCAGTCTTCTGGATGTGGTTAATGCTTTATCAGCAAGACGTGCCTTTAGTGTTCACTATAATCCAAGGGTCAGCTCATCTGAGTTCATTATACCAATTAAGAAATTCTTGAGGAGCCTTGATTATTCTTATTCAGTTGGAACAAGATTCAGGATGCGTTTTGAAACTGAAGAGGCAGCAGAGCGAAGATTTACAGGATTGATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACCTAGAAGCCTCAAGGCATAATAGGGTTTCACCTTGGGAGATTGAGCCATCTGGTTCTGCATCTACTTCAAATAAATTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAACCATGCTAGATTTTCAAGTTTCCAATGCAATTGGATCATCAGACTTTGGCGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTTTGATAGTATTAGTGGTCAGAATCACCAGCTATCTGATTTGAGGAGATGCTATCCTGGCTCAAACTGTCCTAGGATTGCTGCAACTGGAAATAGCATTGGAATTCCACAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTAGGGAATCTTTCATATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGGGCCCTGTCTGTTGATGAGGCTTGTGGAAATGGTAGCTTTGGACCTTTTGATGGTTACCGCACACTGGGACCCAGCAATGGATGGTCTTCCCACTTGAGTAACAATTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAGTGTTCCAGCAAGCAGTCAATCCAGTTTCAAACTCTGATTATAACAGCAAAATCAGTCTGATGATGGAAGGTAAAGTCCATCAACAACTTTCATACACTTCTGAAGCTAAAGGCGGAAAATTTCTATCAGTCCCTTATGAGCCTCTTCGTGGACTAGTTCAGGAAGGCACAAGTTCTTGTGGTGTCTCAAACTTGCATAATCAGTTAGAAAGTTCACGTTCACACGATTCTATTTCAGCACTTCGGGCTAGTCAAGAGTTGGTTCCCACTTGTAAAAGTCGATGCAGAGTCTTTGGCTTTTCATTAACTGAGGGCGCTCCTGTTGCAAGTACAGAAGTAGCTGGCGCCAACCAATCTGCAGTCACATGTTCTGGACCTTCCTTTGCAAGACACGGTGAAGATAGTTTCCACCCAATGCATCTGCATAGGAGCAAGGCAGTGGGAAGTTATTGCACCAAAGGTGTGCTGCAATATTGA 2130 0.4563 MPALIDLNSATEDHETPSSRPSSVCLELWHACAGPMISLPKKGTLVVYFPQGHLEQHLHDFPLPASANIPSHLFCRVLDVKLHAEEGSDEVYCQVVLVPKSEQVHQKLREAEIDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLEYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSAISTFAAEQLNLSSLLDVVNALSARRAFSVHYNPRVSSSEFIIPIKKFLRSLDYSYSVGTRFRMRFETEEAAERRFTGLIVGITDVDPVRWPGSKWRCLMVRWDDLEASRHNRVSPWEIEPSGSASTSNKLISAGLKRTKIGLPSTMLDFQVSNAIGSSDFGESLRFQKVLQGQEMLGVNTTFDSISGQNHQLSDLRRCYPGSNCPRIAATGNSIGIPQVSSNVSCNGIGFRESFIFQKVLQGQEILPSQPYGRALSVDEACGNGSFGPFDGYRTLGPSNGWSSHLSNNSSHLHPPVPSGQVSSPSSVLVFQQAVNPVSNSDYNSKISLMMEGKVHQQLSYTSEAKGGKFLSVPYEPLRGLVQEGTSSCGVSNLHNQLESSRSHDSISALRASQELVPTCKSRCRVFGFSLTEGAPVASTEVAGANQSAVTCSGPSFARHGEDSFHPMHLHRSKAVGSYCTKGVLQY 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02636 709 Gene3D - 297 371 - -
Vian1g02636 709 FunFam Auxin response factor 132 236 - -
Vian1g02636 709 SUPERFAMILY DNA-binding pseudobarrel domain 127 247 IPR015300 -
Vian1g02636 709 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Vian1g02636 709 FunFam Auxin response factor 297 368 - -
Vian1g02636 709 Pfam Auxin response factor 261 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian1g02636 709 CDD B3_DNA 132 234 IPR003340 GO:0003677
Vian1g02636 709 Gene3D - 132 236 IPR015300 -
Vian1g02636 709 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Vian1g02636 709 Coils Coil 101 128 - -
Vian1g02636 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian1g02636 709 SMART B3_2 134 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02636 Vian-Chr1 38771414 38782187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02636 22 534 B3 DNA Binding Superfamily AT5G60450 47.610 1.62e-142 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian1g02636 B3 9.2e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02636 K14486 - gmx:100808119 1164.83