Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02634 ATGACTACCACCTTGGTGGCCGCCGCCGATGACGCGGTGATGTCCAATTTCCTTAAATCGCTGAAGCCACCACCTCCAGGTTGGTCTCAGACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCGTCCAACCGCGTCACCAGCATAAGCCTCGCTTCAAAGTCGCTCACTGGAACGCTCCCCTCCGATCTCAATTCCCTCTCTCAACTCCGTTCCCTCTCTCTCCAAGACAATGCACTCTCGGGCCCCCTCCCCTCGCTCGCCCAACTCTCCTTCCTCCAAACGGCCTACCTCAACCGCAACAACTTTTCAGCCGTTCCCTTGGCCGCCTTCGCCTCCCTGAACTCCCTCCAAACCCTCAGCCTAGCCTCCAACCCTTCCCTCTCACCCTGGACTTTCCCCACCGATCTCACCTCCTCCACCAACCTAATCGACCTCGACCTCGCCTCTGTTTCCCTCTCCGGTGCCTTACCCGACATCTTCCACAAATTTCCCTCTCTACACAGTCTTCGCCTCTCCTACAACAACTTGACTGGTAGTTTACCCTCCTCTCTCGCCATTTCCACAATCGCCTCGCTCTGGCTCAACAACCAGGCAACCGGCTTGTCCGGTACTCTCTCCGTTCTCTCCAACATGACGCAGTTGAGCCAGGCCTGGCTCCACAAGAACCAGTTCACCGGTTCCATTCCAGATTTGTCCCAATGCAAGGGCCTGTTTGACTTGCAGCTCCGAGATAATCGGCTAACCGGCGTGGTTCCTATTTCCTTGACGACTCTTTCGAGTTTAAAGAATGTTTCGCTGGATAACAACGTGCTTCAGGGGCCTGTGCCTGCTTTTGGGAAGGGTGTGAAGGTGACTCTCGATGGAATCAATAGCTTTTGCCTCGATACTCCCGGTGATTGTGATCCCAGGGTGATGGTTTTGCTTCAGATTGCTGAAGCGTTTGGGTATCCCATTCAGTTGGCGAATGCGTGGCAGGGGAATGACCCTTGTAACGGCTGGAACTTTGTTGTGTGTTCCACTGGGAAGATTGTTACTGTCAATTTCGCGAAGCAGGGATTTTCTGGTACCATCTCGTCTGCATTTTCGCAATTAACTGATTTGCGCAGCTTGTTTCTCAATGGAAATAACTTGACCGGTTCTATTCCTGAGAGTTTGACCTCTTTGCCTCAGCTTCAGACTCTTGATGTGTCCGATAACAACCTCTCTGGAGAGATTCCTAAGTTCCCGTCCAAGGTGAAGTTAATGACTACCGGTAATGCTAGGCTTGGGAAGGCTCCTAATCCTGGAGGTGGAGTAAGTGGGTCTACTCCTTCAGGGTCTCCATCTGGTGGAAGTGGTTCTGAATCTGCAAAGGGTAATGCTTCTTTGTCGCCAGGTTGGATTGGTGGTATAGTTGTTATTGTTTTGTTTTTTACTGGAGTATTATTGTTTCTGGCTTGGAAATGTTATGCCAAAAGGCAGCGGCGGAAGTTCAGGAGGGTTAATGGTCGTGAAAATGGCACAGGAAGCTTTAAAATTGAGTCTATCAATGTTTATAATGGTTATGGTGGTGTTCCCAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCGCAGTGACGTTCTTGCTGCTTTTGAAGGTCGAAATGGGTCAATTTCTATTCAAGTTCTTCTACAAGTTACCAATAATTTCAGTGAGGAGAATATTTTAGGTAGGGGAGGGTTTGGAGTAGTTTATAAGGGCGAGTTACATGATGGAACAAAGATTGCTGTTAAGAGGATGGAATCTGTTGCAATGGGAAATAAAGGACTTAACGAGTTCCAAGCAGAGATTGCAGTTCTCAATGGAAAGTATTCTATTGAGACTCGGTTGGCTGGAACATTTGGATATCTTGCACCTGAATATGCTGCCACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGTGTAGTTTTGATGGAACTTGTTACCGGTAGAAAGGCATTGGATGATACCGTGCCAGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGACTACTAATTAACAAGGAAAACATTCCAAAGGCAATTGATCAAATTCTCAACCCCGACGAGGAAACTACGGAGAGCATGTATAAGGTGGCTGAACTGGCTGGCCATTGCACTGCTCGTGAACCATATCAAAGGCCAGATATGGGTCATGCAGTGAATGTCTTAGTTCCTCTTGTGGAGCAATGGAAACCTATTAGTCATGAAGAAGAGGACAGCGGTAACAGTGACTTTCAGATGAGCCTTCCTCAAGCTCTACGAAGGTGGCAAGCCGATGAAGGCACTTCCTCGATATTTAATGATGTATCCATCTCACAAACCCAATTAAGCATCCCCTCTAAACCTGTCGGATTTGCAAACTCCTTCGATTCACTGGATTGCCGGTGA 2409 0.4836 MTTTLVAAADDAVMSNFLKSLKPPPPGWSQTTPFCQWKGIQCDSSNRVTSISLASKSLTGTLPSDLNSLSQLRSLSLQDNALSGPLPSLAQLSFLQTAYLNRNNFSAVPLAAFASLNSLQTLSLASNPSLSPWTFPTDLTSSTNLIDLDLASVSLSGALPDIFHKFPSLHSLRLSYNNLTGSLPSSLAISTIASLWLNNQATGLSGTLSVLSNMTQLSQAWLHKNQFTGSIPDLSQCKGLFDLQLRDNRLTGVVPISLTTLSSLKNVSLDNNVLQGPVPAFGKGVKVTLDGINSFCLDTPGDCDPRVMVLLQIAEAFGYPIQLANAWQGNDPCNGWNFVVCSTGKIVTVNFAKQGFSGTISSAFSQLTDLRSLFLNGNNLTGSIPESLTSLPQLQTLDVSDNNLSGEIPKFPSKVKLMTTGNARLGKAPNPGGGVSGSTPSGSPSGGSGSESAKGNASLSPGWIGGIVVIVLFFTGVLLFLAWKCYAKRQRRKFRRVNGRENGTGSFKIESINVYNGYGGVPSELQSQSSGDRSDVLAAFEGRNGSISIQVLLQVTNNFSEENILGRGGFGVVYKGELHDGTKIAVKRMESVAMGNKGLNEFQAEIAVLNGKYSIETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELVTGRKALDDTVPDERSHLVTWFRRLLINKENIPKAIDQILNPDEETTESMYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPISHEEEDSGNSDFQMSLPQALRRWQADEGTSSIFNDVSISQTQLSIPSKPVGFANSFDSLDCR 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02634 802 Pfam Leucine rich repeat 361 404 IPR001611 GO:0005515
Vian1g02634 802 Gene3D Ribonuclease Inhibitor 9 301 IPR032675 -
Vian1g02634 802 Gene3D Phosphorylase Kinase; domain 1 521 612 - -
Vian1g02634 802 MobiDBLite consensus disorder prediction 422 455 - -
Vian1g02634 802 Gene3D Ribonuclease Inhibitor 305 429 IPR032675 -
Vian1g02634 802 Pfam Protein kinase domain 617 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02634 802 MobiDBLite consensus disorder prediction 434 455 - -
Vian1g02634 802 PANTHER OSJNBA0070M12.3 PROTEIN 6 610 - -
Vian1g02634 802 ProSitePatterns Protein kinases ATP-binding region signature. 565 587 IPR017441 GO:0005524
Vian1g02634 802 ProSiteProfiles Protein kinase domain profile. 453 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02634 802 SUPERFAMILY L domain-like 18 417 - -
Vian1g02634 802 SUPERFAMILY Protein kinase-like (PK-like) 547 733 IPR011009 -
Vian1g02634 802 FunFam Receptor-like kinase TMK4 8 301 - -
Vian1g02634 802 Pfam Leucine rich repeat N-terminal domain 16 43 IPR013210 -
Vian1g02634 802 Pfam Leucine rich repeat N-terminal domain 310 342 IPR013210 -
Vian1g02634 802 FunFam Leucine-rich repeat receptor-like kinase 305 428 - -
Vian1g02634 802 Gene3D Transferase(Phosphotransferase) domain 1 613 733 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02634 Vian-Chr1 38680887 38684312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02634 10 730 Receptor kinase-like Gene Family AT5G25930 24.895 1.29e-50 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vian1g02634 Pkinase 1.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02634 - - gmx:100286794 903.279