Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02617 ATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGACGTGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGCAAATCTCAAGTTCCTGTCCTATCCTTTGCAGCTCCTTCCATAAGCCCATCATTGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCTCACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTTTAGTTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGACTATGAGATGCTAACACTGCTATCAGAGACCCTCCAAGACGTTGGTTCACTGATCGAGTATCGTTTGGCTCTTCCATCTCCTTCTTATCTTTCTAATCCTAGAGAATTCATTCGCCGAGAGTTAATCAAGGTGATTGAAAATACACAGTCTAGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGATGGAGAATCAGCTTGGATAATACCAGAGAGCACAACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGCAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACGTAGCAGTGAATATCAAAATTTTGAGGCTCGGTTCAGGAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTCTACGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAAAATGGCGAGTGGCAGAAAGAGTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCAGAATCCCACTTTCAGGATTGTTAATGTAGATACAAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGTGGGTTCATGAGTAGCCTTCCTACAGAACAAGGTTCAGAGAGTGTTTCTAGGAACACAGAAAGTTTAAGTGGCATTGTAATATGGCCAGGGAAACTAACAAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACCAATGAGAATAGCGATTCCCGGAAGAACCTCCTTTTCCAAGTTTGTCAAGGTTGATCATGACAAGCTTACAAATTCATCTAAATACTCCGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTATTGGGATATGACCTGCCATATGACTTCCATCCCGTGAATGTAACCTATCCTGATCTGGTTCAACTGGTCTATAACAAGTTAGAAAAATTAATAGATGAGTTAATAAAACCTTTACTTGTCCTAAATGCAACAATCGGGGTTGTCGATGATAGTTACGGAGAAGTCGGAAGATTCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCAACTGGTGCCTTGTTGCTGTACACAATGTTCAACGACTGCGACCAAATGTGACTGATATTGAGTTTCTGAAGAAGAACAATATGAAAATTGGTTGTGACGGTGACTCGTTTGTCAAGACATACCTAGAGGAAGTCGAAGGCTTCAAGCCAGAGAACATCGTACACATTAATAATGAATATAGTTATGATGGTGCATTCAAAAATAACTCAATAGCAGCTGCTTTTCTCGAACTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGGAGGTCTGGGATTTATGTTCCCGAAAGCCTCCCCAGTGGCCAGAGACTTTTCCAGAGCTATACTGAGGCTCTTAGAGCAGGGAGACATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGAGTGCTCAAACAATTCGACCTCCAAGAGTTCAGAAAGTTTGACGCTTGGAAGTTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTCTACACCATCCAGTCGCGGAAATCCAGTCACACATCCCAAGATGAGGCAGAAGAACGTAACGGCAACCTTAGTGATGAAAGCCGATGGAAAAGGATATTTGTTATAGCCAGGCAGATCTACACCAGAAAGCATGCACCACTTACACACATGCACCACTTACACACGACCGTCAGCAGGCTATGGCTCCACAATTACCAGATATCATAA 2151 0.4203 MIKTQKMQVIIGMQTWTEAASVAELGRKSQVPVLSFAAPSISPSLMPIRWPSLVRMAHNGTAYAKCVADMVHAFSWQRVVVIYEDGDYEMLTLLSETLQDVGSLIEYRLALPSPSYLSNPREFIRRELIKVIENTQSRVFIVLQSSLEMVIHLFREASEMGLVDGESAWIIPESTTNLLDSVNKSAISYMQGALGIKTYYSERSSEYQNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDKMASGRKSLLREILSSNFVGLSGEIRFEEAQLLQNPTFRIVNVDTKSYRELDFWTPEGGFMSSLPTEQGSESVSRNTESLSGIVIWPGKLTRIPKGWNLPTKQKPMRIAIPGRTSFSKFVKVDHDKLTNSSKYSGFCIEIFEKALPLLGYDLPYDFHPVNVTYPDLVQLVYNKLEKLIDELIKPLLVLNATIGVVDDSYGEVGRFDMDVYEALHLANVGGNWCLVAVHNVQRLRPNVTDIEFLKKNNMKIGCDGDSFVKTYLEEVEGFKPENIVHINNEYSYDGAFKNNSIAAAFLELPYEKVYMSKYCKGYSAFVPTTKFGGLGFMFPKASPVARDFSRAILRLLEQGDIKKLEDKWLNSADECSNNSTSKSSESLTLGSFWVLYVISGATSTICFLLYTIQSRKSSHTSQDEAEERNGNLSDESRWKRIFVIARQIYTRKHAPLTHMHHLHTTVSRLWLHNYQIS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02617 716 SUPERFAMILY Periplasmic binding protein-like II 353 610 - -
Vian1g02617 716 Gene3D - 242 353 - -
Vian1g02617 716 Gene3D - 61 229 - -
Vian1g02617 716 Gene3D - 553 616 - -
Vian1g02617 716 CDD PBP1_GABAb_receptor_plant 2 313 IPR044440 -
Vian1g02617 716 Gene3D - 354 445 - -
Vian1g02617 716 SMART GluR_14 356 610 IPR001320 GO:0015276|GO:0016020
Vian1g02617 716 CDD GluR_Plant 353 608 - -
Vian1g02617 716 FunFam Glutamate receptor 63 228 - -
Vian1g02617 716 Pfam Receptor family ligand binding region 6 293 IPR001828 -
Vian1g02617 716 SUPERFAMILY Periplasmic binding protein-like I 2 346 IPR028082 -
Vian1g02617 716 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 9 427 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02617 Vian-Chr1 38187297 38190268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02617 473 629 Ion Channels AT2G24720 28.916 7.84e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02617 - - gmx:100780320 700.279