Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02595 ATGAGTTCGGGAAGCCATAGTGATAAGGAGAAGGAGAAGGAGAAGCAGAGGGTGAGCCGGACGTCGTTGATACTGTGGCATGCTCACCAAAACGACGCCGCAGCGGTGCGGAAGCTCCTGCAGGAGGATCCTTCGCTGGTGACGGCAAGGGATTACGACAACCGCACCCCGCTCCACGTCGCATCTCTCCACGGCTGGATCGACGTCGCTAAGTGTTTGATCGAGTTCGGCGCCGATGTCAACGCGCAAGATCGTTGGAAAAACACCCCTCTGGCGGATGCGGAAGGAGCTAAGAAGACTGATGTGATCGAGCTTTTGCAATCTCATGGAGGCTCTTCTTATGGGCAAACTGGTAGCCATTTTGAACCGAAGCCTGTTCCGCCGCCGTTGCCGAATAAGTGTGACTGGGAAATCGAACCTACCGAGCTTGACTTCTCCACCTCCACGAGAATTGGAAAGGGGTCTTTTGGTGAGATTTTAAAAGCCCATTGGCGTGGAACACCAGTTGCTGTTAAACGTATTCTTCCATCTCTTTCAGAAGACAGATTGGTGATTCAGGACTTCAGGCATGAGGTCAATTTGTTAGTGAAACTTCGACACCCCAATATAGTTCAGTTTCTTGGAGCTGTCACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTGAGAGGGGGTGATCTTCATCAGTACCTCAAGGATAAAGGTACACTTAGTCCAGCAACAGCTATCAACTTTTCCATGGATATTGTGAGAGGAATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGGGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATACTAGTGCCGACCATTTAAAAGTTGGAGATTTTGGATTGAGTAAGCTTATCACTATCCAGAGTTCTCATGATGTATACAAGATGACCGGTGAAACTGGGAGCTACCGCTATATGGCTCCTGAAGTGTTCAAACATCGGAGATATGATAAGAAGGTTGATGTGTACTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAATCTCGAGCCTTATGATGGAGCAAAACGTGCTGCTGAGGGTCAAAGGCCTTCATTTCGGTCAAAGGGTTATATCAATGAATTGCAAGAATTAACGGAACAGTGTTGGGCTCATGACGTGAATCAGAGACCACCCTTCATAGAGATCCTTAAACGTCTTGAAAAGATCAAGGAGAATTTACATTCAGATCATCACTGGCATTTGTTTGCATCATAA 1266 0.4621 MSSGSHSDKEKEKEKQRVSRTSLILWHAHQNDAAAVRKLLQEDPSLVTARDYDNRTPLHVASLHGWIDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKTDVIELLQSHGGSSYGQTGSHFEPKPVPPPLPNKCDWEIEPTELDFSTSTRIGKGSFGEILKAHWRGTPVAVKRILPSLSEDRLVIQDFRHEVNLLVKLRHPNIVQFLGAVTDRKPLMLITEYLRGGDLHQYLKDKGTLSPATAINFSMDIVRGMAYLHNEPNVIIHRDLKPRNVLLVNTSADHLKVGDFGLSKLITIQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVYSFAMILYEMLEGEPPFANLEPYDGAKRAAEGQRPSFRSKGYINELQELTEQCWAHDVNQRPPFIEILKRLEKIKENLHSDHHWHLFAS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02595 421 PRINTS Tyrosine kinase catalytic domain signature 374 396 IPR001245 GO:0004672|GO:0006468
Vian1g02595 421 PRINTS Tyrosine kinase catalytic domain signature 258 276 IPR001245 GO:0004672|GO:0006468
Vian1g02595 421 PRINTS Tyrosine kinase catalytic domain signature 220 233 IPR001245 GO:0004672|GO:0006468
Vian1g02595 421 ProSiteProfiles Protein kinase domain profile. 145 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02595 421 ProSitePatterns Protein kinases ATP-binding region signature. 151 172 IPR017441 GO:0005524
Vian1g02595 421 SUPERFAMILY Ankyrin repeat 24 114 IPR036770 -
Vian1g02595 421 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vian1g02595 421 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vian1g02595 421 Gene3D - 2 121 IPR036770 -
Vian1g02595 421 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Vian1g02595 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Vian1g02595 421 CDD STKc_MAP3K-like 151 403 - -
Vian1g02595 421 PIRSF ILK 1 421 - -
Vian1g02595 421 FunFam Integrin-linked protein kinase family 224 419 - -
Vian1g02595 421 Gene3D Phosphorylase Kinase; domain 1 137 224 - -
Vian1g02595 421 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Vian1g02595 421 Gene3D Transferase(Phosphotransferase) domain 1 225 418 - -
Vian1g02595 421 SMART serkin_6 145 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02595 421 Pfam Ankyrin repeats (3 copies) 21 84 IPR002110 GO:0005515
Vian1g02595 421 Pfam Protein tyrosine and serine/threonine kinase 147 403 IPR001245 GO:0004672|GO:0006468
Vian1g02595 421 FunFam serine/threonine-protein kinase STY46-like 138 224 - -
Vian1g02595 421 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 81 408 - -
Vian1g02595 421 SUPERFAMILY Protein kinase-like (PK-like) 135 416 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02595 Vian-Chr1 37485954 37492384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02595 10 421 MAP Kinase Kinase Kinase AT1G14000 83.252 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vian1g02595 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02595 - - gmx:100793237 776.163