Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02587 ATGGGTAGGTCACCATGCTGTGAAAAAGTGGGCTTGAAGAAAGGCCCTTGGACTCCTGAGGAGGACAAAAAGCTCATGGCTTACATAGAAGAGTTCGGCCACGGAAGCTGGCGTGCCTTGCCTTCAAAAGCTGCATATAGATGGTCAGCTATAGCGGCTCAACTTCCGAAGAGAACCGACAATGAGATAAAGAACTACTGGAACACACACCTGAAGAAAAGGTTAACAAGAATGGGGATAGACCCCACCACCCACAAGCCCAAAACCGATGCGCTTGGTGGCTCCGGTGGTTGCCAATCCAAGGACGCAGCGAACCTCAGCCACATGGCGCAGTGGGAGAGTGCTCGTCTCGAAGCGGAAGCAAGACTGGTGAGAGAGTCAAGGTTGCAAGTCCAGAGCAACCTGGGACCCGGCTCCAACACACAACCCGCGAGGCTGGTCCTCAACAAAATTACTACGCAACAACCCTCTCTACCACCCTGCCTCGACATCCTCAAAGCATGGCAAAGCTCATGGTCGAAGCCACAACCACCAACAAAAGAAAGTAACCCCAAAATGATGCATAGCATGTACGCCATGATGCTATCCACCGAAGACACTCTAGAGTCACCAACCTCCACGTTGTGCTTTCCAGGAACGACACCAACCATGCTTCCTGTATCCAACAATAACAACATTGGAGTACTGTTCAACGAAAACAACGACATGTTTCCTCTCCCAAGCACAAACATGGATGGTGGGTTGATGAAAGAGAACACGGTGTTACATTTGCAAGACGATGATATTATGGCGGCTGTGGAAGCATTTAGAGCCACTACTACAATGTACGACAGCAACAATAATGTTGTTCCTCCCACACTCCCCAACGGTGTTGTCCTCGAAGGACTCAACAATGATGAAGGGTTGGTTTATGACTCCAACGATAACTTGGGAGCGGAGGAAGAGAACATGGCAATGATGAACGGGGATGGAAGCCTCTGCAACGTGAACCTGGAAGAGAATAACAAGCATTACTGGAATAACATATTTAATTTGGTGAATGATCCCTTGTCTGGTCCCTCTGTCTTCTGA 1071 0.4911 MGRSPCCEKVGLKKGPWTPEEDKKLMAYIEEFGHGSWRALPSKAAYRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTDALGGSGGCQSKDAANLSHMAQWESARLEAEARLVRESRLQVQSNLGPGSNTQPARLVLNKITTQQPSLPPCLDILKAWQSSWSKPQPPTKESNPKMMHSMYAMMLSTEDTLESPTSTLCFPGTTPTMLPVSNNNNIGVLFNENNDMFPLPSTNMDGGLMKENTVLHLQDDDIMAAVEAFRATTTMYDSNNNVVPPTLPNGVVLEGLNNDEGLVYDSNDNLGAEEENMAMMNGDGSLCNVNLEENNKHYWNNIFNLVNDPLSGPSVF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02587 356 ProSiteProfiles Myb-like domain profile. 9 71 IPR001005 -
Vian1g02587 356 CDD SANT 16 71 IPR001005 -
Vian1g02587 356 SUPERFAMILY Homeodomain-like 3 81 IPR009057 -
Vian1g02587 356 Gene3D - 11 77 - -
Vian1g02587 356 MobiDBLite consensus disorder prediction 80 102 - -
Vian1g02587 356 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 44 - -
Vian1g02587 356 Pfam Myb-like DNA-binding domain 14 71 IPR001005 -
Vian1g02587 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 75 IPR017930 -
Vian1g02587 356 SMART sant 13 73 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02587 Vian-Chr1 37343197 37344893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02587 1 210 MYB Transcription Factor Family AT3G01140 47.012 7.50e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g02587 Myb_DNA-binding 6.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02587 K09422 - gmx:100809025 554.288