Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02582 ATGTCCCACAAGGATTCTGGAGATTTTCCCTCTCTGAACAACACGGTTTCAATCCACAAATCACCCTTTGCAACATCAAAAGTGGACATCTGGAAAATGGCTCTTGTTATCTTGATGGGTTTTCTCACAATGCTCTCCTCTGCTCATGCTTATGATGGAGGGTGGACTAGTGCTCATGCCACTTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGTGGAGCATGTGGGTATGGAAACCTCTACAGCCAAGGCTATGGAACAAACACTGCTGCTTTGAGCACTGCGCTGTTCAACAATGGGTTAAGCTGTGGCTCTTGCTTTGAGATTAGGTGTGCAAATGACCACAAGTGGTGCCTTCCTGGATCGATTTTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCTTACCAAACAATGCTGGTGGCTGGTGTAACCCTCCTCTTCAACACTTTGATCTCGCTCAGCCCGTCTTCCTACGCATTGCTCAATACCGCGCTGGAATTGTGCCTGTGTCCTACAGAAGGGTGCCCTGCAGGAGAAAGGGAGGGATCAGATTCACCATTAATGGACATTCTTACTTCAACCTAGTCCTCATCACAAACGTGGGCGGTGCTGGAGATGTGCATGGTGTGGCCGTCAAAGGTTCAAGAACTGGTTGGATGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTGAATGGTCAAAGCCTCTCCTTCAAGGTTACCACAAGCGATGGCCGAACTGTGGTGTCGAACAACGTTGCACCAGCTGGTTGGTCCTTTGGACAAACATACACCGGTGCTCAATTCCGCTAG 837 0.4922 MSHKDSGDFPSLNNTVSIHKSPFATSKVDIWKMALVILMGFLTMLSSAHAYDGGWTSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCANDHKWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHGVAVKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQFR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02582 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 274 IPR007117 -
Vian1g02582 278 Pfam Expansin C-terminal domain 186 263 IPR007117 -
Vian1g02582 278 Pfam Lytic transglycolase 90 175 IPR009009 -
Vian1g02582 278 Gene3D - 185 277 IPR036749 -
Vian1g02582 278 PANTHER EXPANSIN-A15 33 277 IPR002963 GO:0009664
Vian1g02582 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 73 185 IPR007112 -
Vian1g02582 278 SUPERFAMILY Barwin-like endoglucanases 54 203 IPR036908 -
Vian1g02582 278 CDD DPBB_EXPA_N 54 180 - -
Vian1g02582 278 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Vian1g02582 278 FunFam Expansin 185 277 - -
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 94 112 IPR007118 GO:0005576
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Vian1g02582 278 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Vian1g02582 278 Gene3D - 41 181 IPR036908 -
Vian1g02582 278 SMART dpbb_1 90 175 IPR007112 -
Vian1g02582 278 PRINTS Expansin signature 112 123 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 124 134 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Vian1g02582 278 PRINTS Expansin signature 85 99 IPR002963 GO:0009664
Vian1g02582 278 FunFam Expansin 44 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02582 Vian-Chr1 37191023 37192605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02582 32 278 Expansin Gene Family AT2G03090 82.731 7.32e-156 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02582 - - gmx:100527059 483.026