Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02581 ATGACCGATTTTACCGGTCCCCCAGACATGTTAACGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAGAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGACATAGATATCATACTTCTCATGTTTGCGCCAAATGGAAAGCCTTCGGCACTGAAGAAAACGTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGCACAAGTTGTTGGACTGAGTTTGATAAAATAACCAATGTGGAACAACTAGGACAGATGGAAAATTCACTCAGGGAGTCCCTAAATCAAATTCGAACCCGAAAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTGCGAATGGTGACAGCCAGAATATAGTTTTACCTGAGGACTCAACCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCGAGTTATCTTGGTTCAAGTATGAAGAATGAGATGTCTAACTCGGCACAAGAAAATGGGGTTCTTAGTGAGCTGAGCAGCACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATATCTTCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAAATGCAGAGATGAATCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGTTTAGAAGCACCGAGATCTGGTTTTGATTCTAATCACCATGCTTGGGCTTCCACATCAGGGCCCTGTGGTGTTACAATGTTTGATGACCAGTTGTATGCCCAGGCAAGCTCCACTAAAATGCACTTTGGCTTCACATAG 888 0.3975 MTDFTGPPDMLTMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSALKKTFKKLDHDVNIQEFLGTSCWTEFDKITNVEQLGQMENSLRESLNQIRTRKFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSTMFLHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSELSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPNAEMNPHENPVDYHVNGSLEAPRSGFDSNHHAWASTSGPCGVTMFDDQLYAQASSTKMHFGFT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02581 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 66 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 CDD MADS 14 66 - -
Vian1g02581 295 SUPERFAMILY SRF-like 13 68 IPR036879 GO:0003677|GO:0046983
Vian1g02581 295 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 ProSiteProfiles MADS-box domain profile. 13 65 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 184 - -
Vian1g02581 295 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Vian1g02581 295 Gene3D - 26 123 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02581 Vian-Chr1 37171039 37174644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02581 13 284 Type I MADS-box Gene Family AT2G03060 37.566 3.06e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g02581 SRF-TF 7.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02581 - - gmx:100811701 434.491