Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02579 ATGTTGATGGGGACAGAGATATTGAAAGAGAGAGAAAATAGCAATGGCAAAGCAAAGCCCTCAATTTTGATGTGCTTTGAAAAGAAAGATGTCCCTGCTGCTGCCACAACCCCAACATTTGTGAGCAAGTCAGAGAACATGAAGGCGTGGCCTGCTAGTGTTGTATACTCCTCACAAGAAAACCTCACTCGATACGCTTCTTCTTCTTCCTACTCTTCTTCCCCTCCCTCGATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCTAACTATGGTGTCGTTTCGTCTCATCAAGATTGTTATGTCTCCAACGGCGGCGGCTCAAACTGGGGTTTGCCCTTTATGAGGGAATTCCTTGGGAGGAACTTTGAGGAACAGCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGACGATGGTGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAACCTTAATGAGAATTCTAATAGTGGTTCGGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCGGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTCTACGGCCCTCAGAACTGGAACCTCATAGCCGAAAAGTTAGAAGGAAGATCAGGAAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGAGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACAACAAGCAGCAATGTCTCTAGAGACACAGCCACTGCAGGGACAGAACCACCACCACCACCCTATTGTCTCAGTCTCCCTAACGGAGGACTTGCTAACAACAACATGCCGAGTTTCCCATATGCCGCTGCACCCTTCCATGGAGTAGCTGCTCCTCCTGGTGGTGGTGGTGGGGTTGAGTATGGCTTAAATGGCTCACCCCACATGGCTGCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCACATTGCCATGTATCCTCAACAAACACCGCTTGATTTCTTTTCAGGTGGTAGAAGCAATGACATGGTGGGAGAGTATTTTGGCCAGAACCATCAGCAACCGTCTGGTTTTTACTCTCATTACCCCCAATATCTGATGCTAATGCAACAACACCAAAACAATCACAACTTTTACGGTTTCTCAAATTCCACAGCACAGATACTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACACAGAGATCAAGCCATGAGCAGTGACCCCCCAGATGCAATTCCTCCGCCATTTATTGACTTCCTTGGAGTAGGAGCCACATGA 1494 0.4779 MLMGTEILKERENSNGKAKPSILMCFEKKDVPAAATTPTFVSKSENMKAWPASVVYSSQENLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGGSNWGLPFMREFLGRNFEEQPNSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNEENLNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTTSSNVSRDTATAGTEPPPPPYCLSLPNGGLANNNMPSFPYAAAPFHGVAAPPGGGGGVEYGLNGSPHMAASKEAISTTKLAPPHIAMYPQQTPLDFFSGGRSNDMVGEYFGQNHQQPSGFYSHYPQYLMLMQQHQNNHNFYGFSNSTAQILGSEASLSSVAEHRDQAMSSDPPDAIPPPFIDFLGVGAT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02579 497 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Vian1g02579 497 CDD SANT 237 277 IPR001005 -
Vian1g02579 497 FunFam MYB transcription factor 183 234 - -
Vian1g02579 497 PANTHER MYB PROTEIN-RELATED 168 317 - -
Vian1g02579 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 229 IPR017930 -
Vian1g02579 497 MobiDBLite consensus disorder prediction 127 179 - -
Vian1g02579 497 Gene3D - 183 234 - -
Vian1g02579 497 MobiDBLite consensus disorder prediction 154 178 - -
Vian1g02579 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 284 IPR017930 -
Vian1g02579 497 MobiDBLite consensus disorder prediction 302 319 - -
Vian1g02579 497 SUPERFAMILY Homeodomain-like 183 276 IPR009057 -
Vian1g02579 497 ProSiteProfiles Myb-like domain profile. 183 229 IPR001005 -
Vian1g02579 497 CDD SANT 186 227 IPR001005 -
Vian1g02579 497 Gene3D - 236 307 - -
Vian1g02579 497 MobiDBLite consensus disorder prediction 130 153 - -
Vian1g02579 497 MobiDBLite consensus disorder prediction 302 333 - -
Vian1g02579 497 FunFam MYB transcription factor 236 309 - -
Vian1g02579 497 Pfam Myb-like DNA-binding domain 183 229 IPR001005 -
Vian1g02579 497 Pfam Myb-like DNA-binding domain 235 278 IPR001005 -
Vian1g02579 497 SMART sant 234 282 IPR001005 -
Vian1g02579 497 SMART sant 182 231 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02579 Vian-Chr1 37067513 37070099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02579 72 300 MYB Transcription Factor Family AT1G69560 53.782 1.72e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g02579 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02579 K09422 - gmx:100804537 566.229