Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02569 ATGGACCTGACCTCCAGCTGTACCCACACAATACAAACCTTCGATGCTGATACTAAGACCACACCACCCGTCAACCCCACCAATAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCACCCCAAAGCGCCACCCCTCCACCACCGCCGCTCCACCGCCTCAACCACCCTCCATGGTCGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGTGGCTGCCATCGCAACTTCCACCGCCGTGATCCTCGGGAACACAGTAACCTCAACAACAACAACATTCACGGCGCCAACCCCAACACCGCCGCCACCACGAACAATAACCCGACTTTCCTAAGCTGCATCTACACCCCTTCGGCACCGGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCCAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCGGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTACTCTACTCCCTCCGATGAACACCCCCACCACCGAGGCCTAACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCAAAACTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACCTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATGCAAATTCTCCTCAAAGTATCGGAGATCATGATGACGGCAATAACACCAGTGGTGGAGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAGTAGCAACAACAATGACATTCACATGAATGAAGGAGATGGATGTGGCAATGTTCATGTCTCTCTTAATGGACTGTCATCTTAG 1107 0.5348 MDLTSSCTHTIQTFDADTKTTPPVNPTNNTTPKSLSFTNGTPKRHPSTTAAPPPQPPSMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPREHSNLNNNNIHGANPNTAATTNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDEHPHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMQNFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANANSPQSIGDHDDGNNTSGGGGFDSDINNPYNPSSNNNDIHMNEGDGCGNVHVSLNGLSS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02569 368 MobiDBLite consensus disorder prediction 155 177 - -
Vian1g02569 368 SUPERFAMILY Homeodomain-like 230 296 IPR009057 -
Vian1g02569 368 MobiDBLite consensus disorder prediction 300 351 - -
Vian1g02569 368 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Vian1g02569 368 MobiDBLite consensus disorder prediction 112 137 - -
Vian1g02569 368 MobiDBLite consensus disorder prediction 300 353 - -
Vian1g02569 368 MobiDBLite consensus disorder prediction 121 137 - -
Vian1g02569 368 NCBIfam homeobox domain, ZF-HD class 235 292 IPR006455 -
Vian1g02569 368 MobiDBLite consensus disorder prediction 14 57 - -
Vian1g02569 368 FunFam Zinc-finger homeodomain protein 2 223 296 - -
Vian1g02569 368 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 293 - -
Vian1g02569 368 MobiDBLite consensus disorder prediction 155 195 - -
Vian1g02569 368 MobiDBLite consensus disorder prediction 178 193 - -
Vian1g02569 368 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
Vian1g02569 368 Gene3D - 226 295 - -
Vian1g02569 368 MobiDBLite consensus disorder prediction 14 46 - -
Vian1g02569 368 Pfam ZF-HD protein dimerisation region 61 114 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02569 Vian-Chr1 36798202 36799308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02569 59 294 ZF-HD Transcription Factor Family AT1G69600 48.560 3.14e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian1g02569 ZF-HD_dimer 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02569 - - vum:124843063 678.322