Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02566 ATGGCAGTTATGAAAAGCAAGTTTCAAAGAAAGAAAGTTCTTTTGATTCTTGATGATGTTGATAAATTGGAGCAATTAAAGGCACTTGCTGGTGATCCTTCCTGGTTTGGTGATGGCAGCAAAATCATTGTCACGACAAGGAACAGACGTTTTTTACGAGTACATGGTGTTGAAAGAACATACGAAGCCAAAGGGTTGGATGATAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGCAATGAAGTTGGTCCAGGTTACTTGGATATCTCTAAGCGTGCAGTATTTCATTGCAATGGCCTTCCATTGGCTTTAGAAATAATAGGTTCTAACTTGAATGGTATAACAATGTCTGAATGGGAAGCCGCATTAGATACCATTGAAAGAATTCCAGATGAAGATATTCAAGAAAAACTAAAAGTAAGCTATGATGGTTTGAAGGGAAATGAAAAGGAAGTTTTCCTTGACATGGCTTGTTTCTTTAGAGGCTACCATTTGAAAGATGTCATAAATTTATTGCTCCAAAGTCGTGGTTTCTCACCCGAGTATGTTATTCGCATGTTGGTAGATAAATCTCTCATAAAAATCGATCAATATGGTTTTGTGCAAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATAGTAAGGCAAGAATCACCATCAGAGCCTGGAAAACGCAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAAGTGATACAATTGAAGTAGTCATGCTACACTTGCCAAAGAATAGGGAAGTTCTATGGAATGGAAGTGAGCTCAAGAAGATGACAAACTTAAAAATGCTAACTATTGAAAATGCTGACTTTTCTAGAGGCCCTGAATATCTCCCAAGTAGTTTGAGAGTACTAAAGTGGCGGGGATATCCTACACAGTCTCTGCCACCTGAATATGATCCAAGGAGACTTGTTATGTTAGACTTGTCTATGAGTCGCAATATATTGGGCAAACAACTCAACCTCATGGTATGCACAATTGATATCTTTCTTGAAATATTTTGTTTGTTTTATATATTTATATTCATAAACAGCATGTGGAAATTTCCAAAACTAATTATTTTTAGTTTGGCTTACCAGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAGGCACCTGACATGTCTGGAGCCAAAAATTTAAGAAAGCTTTGTCTTGATAACTGCAAGAATTTAGTAGAAGTTCATAATTCCATCGGACTTCTTGACAAACTAACATGGTTCACTGCTATTGGATGCACCAGTCTAAGGACTCTTCCCCATAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTCAGAAAATGTTCAAGCCTCCAGCGTTTGCCAAACATATCAGAAGAAATGAAACATATGAAAAATCTTGACCTTTGTGGAACTGCTATTGAACAATTGCCATATTCGTTTAGGAAACTCACTGGGCTTAAATATTTAGTACTAGACAAGTGCAAGAGGCTTAATCAGATCCCAATAAATATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGAAGATATGTAAATTTGATCCTTGGTAAAAGTGAAGAACAAGTAAGATTGGCTTCGTCTGAGTCTTTGAGAGATTTTAGGTTAAACTACAATGATTTGACACCCACCAGCTTCCCCAATGTAGAGTTCTTAGTTCTAACTGGCTGTGCTTTCAAAGTTCTTCCTGAATGCATCAGCCAATGTCGCTTTCTAAAGAATCTAGTTTTGGACAACTGCAAGGAGCTTCAAGAAATCAGAGTGGTTCCTCCTAAGATAAAATATCTGTCGGCAATAAACTGCACATTATTGTCTCATGAGTCTCAAAACATGTTGTTGAATCAGAAATTACATGAGGGTGGGGGAACAGATTTTTCCCTTCCAGGAACAAGGTTACCAGAATGGTTTGATCATTGTACTAGGGGACCATCCCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGACTCTAGCTGTTGTTGGAGTTTTAGACAAGCAAGGCAGTTTTCCCATGTCAAGATTCCACTTTCTCAGCAATGGCATTCAAAAGCTGCATTGCCATTTCACTGTGCAATCAAAATTAATCACATATCATATATTCTTGTCCGATGTGCTGCTAAAGTCCTACAATGGTGGATTGGAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGGTTTCATACGTGGGACCAAGAGTCTTTTCACATTCATGCAGAACCAAGAAAGGAACCATTAAATGGATGGGGGTTCATGTTCACAAGCAAAAAACAAACATGCAAGATATTCGGTTCATAAATCCTTGGTTTCCGAAAAGAGCACATAGTGAAGTTTCCAAGGCTGATCTGCAAGAAAGTTTTCAGCCTTTGCCCAAAAGAATCCGTGTATCACATCGCAAGGAAATTTGTGAGGCACCAGAGATGAAGCAGCATGAAGCTAACAGCAGTTATCACGGTGTATCACAGAGGCTATGGTTGGCAATTTGTAGCATTGCAGCTCCTCTGAATGTTAAAGTACTGATGTGGAATATTTGTCAGGATGATTTGCCAACTTTTGAATATCTTTTCAGGAGAAAGCTTGTACTTAGTCCGCTCTGCCCCATATGTGGAACGGAGCCTGAAACTGTTGAACATGTGTTCCTGTTTTGTCCATGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCGTTGATGTTAAAGAAGTTCAAAGCTTTCAACTTTGGCTTTGGCATAAACTGATGGAGATTCAAAGGGTATATCCAGAAAATGCCAACCAAATATCGGCTCAGGTAGGAAGCATTTGTTGGTCTATCTGGAAAGGAAGGAATGAATTTGTTCTTGAAGGCAAACCTGTCAATCCTTTGATTTTAAGGTAG 2952 0.3862 MAVMKSKFQRKKVLLILDDVDKLEQLKALAGDPSWFGDGSKIIVTTRNRRFLRVHGVERTYEAKGLDDKEALELFSWHAFKSNEVGPGYLDISKRAVFHCNGLPLALEIIGSNLNGITMSEWEAALDTIERIPDEDIQEKLKVSYDGLKGNEKEVFLDMACFFRGYHLKDVINLLLQSRGFSPEYVIRMLVDKSLIKIDQYGFVQMHNLVEDMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGSDTIEVVMLHLPKNREVLWNGSELKKMTNLKMLTIENADFSRGPEYLPSSLRVLKWRGYPTQSLPPEYDPRRLVMLDLSMSRNILGKQLNLMVCTIDIFLEIFCLFYIFIFINSMWKFPKLIIFSLAYQKFESLSEMVLRGCRFIKQAPDMSGAKNLRKLCLDNCKNLVEVHNSIGLLDKLTWFTAIGCTSLRTLPHSFKLTSLEYLSLRKCSSLQRLPNISEEMKHMKNLDLCGTAIEQLPYSFRKLTGLKYLVLDKCKRLNQIPINILMLPKLERLTAVKCGRYVNLILGKSEEQVRLASSESLRDFRLNYNDLTPTSFPNVEFLVLTGCAFKVLPECISQCRFLKNLVLDNCKELQEIRVVPPKIKYLSAINCTLLSHESQNMLLNQKLHEGGGTDFSLPGTRLPEWFDHCTRGPSLSFWFRNKFPRMTLAVVGVLDKQGSFPMSRFHFLSNGIQKLHCHFTVQSKLITYHIFLSDVLLKSYNGGLESVYGEDGWNHVEVSYVGPRVFSHSCRTKKGTIKWMGVHVHKQKTNMQDIRFINPWFPKRAHSEVSKADLQESFQPLPKRIRVSHRKEICEAPEMKQHEANSSYHGVSQRLWLAICSIAAPLNVKVLMWNICQDDLPTFEYLFRRKLVLSPLCPICGTEPETVEHVFLFCPWTRPLWFGSDFQWCVDVKEVQSFQLWLWHKLMEIQRVYPENANQISAQVGSICWSIWKGRNEFVLEGKPVNPLILR 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02566 983 Gene3D Ribonuclease Inhibitor 255 470 IPR032675 -
Vian1g02566 983 Gene3D Ribonuclease Inhibitor 471 642 IPR032675 -
Vian1g02566 983 SUPERFAMILY L domain-like 251 632 - -
Vian1g02566 983 Gene3D - 1 58 IPR027417 -
Vian1g02566 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 158 IPR027417 -
Vian1g02566 983 Gene3D - 65 149 IPR042197 -
Vian1g02566 983 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 514 IPR044974 GO:0006952
Vian1g02566 983 PRINTS Disease resistance protein signature 7 21 - -
Vian1g02566 983 PRINTS Disease resistance protein signature 100 114 - -
Vian1g02566 983 PRINTS Disease resistance protein signature 446 462 - -
Vian1g02566 983 Pfam NB-ARC domain 8 141 IPR002182 GO:0043531
Vian1g02566 983 Pfam zinc-binding in reverse transcriptase 846 913 IPR026960 -
Vian1g02566 983 SUPERFAMILY "Winged helix" DNA-binding domain 136 243 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02566 Vian-Chr1 36739300 36743727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02566 2 530 WRKY Transcription Factor Family AT4G12020 33.889 2.93e-66 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02566 - - var:108319971 2011.11