Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02549 ATGAATGTTATTGATCGATGTTGGAGACCAAATCCCGAATGGAGGAGACATCGATCTCAGTTAGCCACATGTTCTGTGGGCTATGCTGGTAAGATGATAAATAACATTGGTAATGACCTTGTTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCAAAACCCAACACCTTGAGATATGGAACTTCTATTATTCAAGGTAAAGTATGGATCACATTCCAGAAAGACATGCTCATTACATTAGAGAAACCTCTTCTCATTAGCAGTTTTACTACTATCGATGGTCGAGGTGTTAACGTCCACATTGCTAATAATGCATGTTTAATGATCTTTAAGGCCACCAACATAATTATCCATAACATTCGAGTTCATCATTGTAAACCCCAAGCCCCTGGGATTGTAATGGGGCCCGAAGGAAAGGTTATTCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACATTGTATGATTGTCAAGACGGTTTGCTAGATGTAACACGAGGTTCCACTGATGTGACTGTCTCCAATAATTGGTTCAAAAACCAAGATAAAGTCATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAAAATATGAAGGTTACAGTCGTGTACAACCATTTTGGACCTAATTGTAATCAACGTATGCCAAGGATTCGTCATGGATATGCGCATGTAGCCAATAATCTTTATCAAGGATGGCTTCAGTATGCAATTGGTGGAAGCATGGAACCAAGCCTCAAAAGTGAAGCTAATCTCTTTGTAGCACCAACCATAGGAAATAAAGAGGTGACATGGAGAAAAAAGGATGATATAAGTGGAGATAGATTGGATTTTCATTCCGTAAAGGATATGTTTGAGAATGGAGCTTCATTCACCGTAAAAAAAGGAGGACGTGTGCAAAAACCAAATTATAATAAGGAACAAAATTTCGAAGTTGTTGATGCCAAATTTGTAAGATCGTTGACACGCTCATCGGGCGTGTTACGACTTAATAAAAAATCCAAATATACTAATTAA 1065 0.3784 MNVIDRCWRPNPEWRRHRSQLATCSVGYAGKMINNIGNDLVHYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHNIRVHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTVSNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKKDDISGDRLDFHSVKDMFENGASFTVKKGGRVQKPNYNKEQNFEVVDAKFVRSLTRSSGVLRLNKKSKYTN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02549 354 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Vian1g02549 354 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Vian1g02549 354 SMART amb_all 78 275 IPR002022 -
Vian1g02549 354 Pfam Pectate lyase 89 269 IPR002022 -
Vian1g02549 354 Gene3D - 1 345 IPR012334 -
Vian1g02549 354 SUPERFAMILY Pectin lyase-like 1 310 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02549 Vian-Chr1 36396617 36398003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02549 32 279 Polysaccharide Lyase AT5G09280 71.774 2.39e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02549 K01728 - gmx:100780437 630.172