Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02547 ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCACTTACATTTCTTAAGAAAGGCTCGTATCTTCTAAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTGTTATGGTACTCTGGCAAGGAAGAGAAACAGCTTAAGCTTGGTACAGTTTCAAGGATCATTCCAGGGCAGAGAACTGCAACATTTCAGCGGTATCCACGACCTGAGAAGGAATATCAATCATTTTCTCTTATATACAATGACAGATCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTATTGGTCTTAAGGCATTAGTTACTCGAGGGAACAGTCACAAGTGGAGATTTGAGTCAAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAAATCTAGCACACGAAAATCCACTCCTTCAAATACACCATTTTCTGACCCTGGAGATGGCGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTTAAGGCTTTCTCTGAAATAATTTCGTTCAATGCAGCTAGCAAGGGTTCCAGTCAAGCTGAATCTATTGCAAATTCCTCTTTATCCTCTGGATCTGCAGATAACTCAAGCAATCGAAATTCTTCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGTCAGGGTTCTTATCATGAAGATTTTGATTCCCTAAGTGATATTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCTGAGATGGATGCTTTCCTCCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCAAAGTATTAGTTGTGGCTACAGACATGCTGTTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTCATCACCCTAAACTTGTTGAAGCTCTTGGTGGCTTGAATATTGAGTTAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGACATGGAATTGAAGCCACTCACTGGATTCCTAAGAAAGTAAGTGGTAATTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAATTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGACACGGAAATCATAGTAGTGCAACTATTCCTCAGGAAGTGGAAACTTTGAGAGGGTTTAGAACAACCAGGGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTGGAGGTGATAATTGAGTCTGTGGAATCTTCTACAAGCTCATCTTGTAAAAGACTGTTCACGTGGGGTGATGGAGACAAAGGCCAACTTGGACATGCGGATAAGAAACCTAGACTAGTTCCTGAGTGTGTAATTGCATTGAGTACTGAAAACATTAGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACGTGTATATACAGTAGGAAGCACTGCTTATGGGCAACTTGGCTGTCCTGCATCCGATGGAAAAGTCCCTACATGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAACTTTACCCTTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATTCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAATTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTTTAAAAGCTTCCCTTGCTCCCAATGCTAGTAAGCTGTATCGAGTTTGTGAGGACTGTTATCTCAAACTTAAAAAATCTTCTGAATCAGTACCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAACAGAACCACTAAAATACAGGGAACACTATTGAGGCTTTCATCTTTTGGTTCTATTCTTCATACAGTAAGTGGTCAATCGAAGCTTCCAGATTCACAAGATATTCATCGTTCCCCGGCTTCAAATGGAAAATTAGAGATGAGGGGTTTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTGGATTCTAAGAAACACATTTCATTTTCTGAGCCTGTTGCAAGAATATCTTGTCAATCATCTCCAGTTTCATCAAAGTCAAGTCCAAGAGAATTGTATGAAGATATCAATGATGATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCGAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTACAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGGCTGCCAGAAGGACACAATGCTGACTCCAGTACAGAGCTCTGTGCTGAAACCACTAAAAATATTCTAGATCATTCCTTGGATGTGAGCCATATAAGAAACACTATCATGCTAAAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTTCGTAAGTTTGTCTCCCCAGCCAGGTGGTGGTAATGAGCTTAAGCGCGTTCGCTTCAGTCGAAAGCATTTTACAGAAGAAGAAGCTGAGAAGTGGTGGACGGAAAATGGAAGCAAAATATTGGAGCGGCACAATATAGTTGCTTTATAG 3042 0.4096 MADPQKTALGERDIEQALTFLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLGTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFIGLKALVTRGNSHKWRFESRTDDSQCSDSPKSSTRKSTPSNTPFSDPGDGGGAAFDVKNRWVKAFSEIISFNAASKGSSQAESIANSSLSSGSADNSSNRNSSSEAFRVSLSSAVSSSSQGSYHEDFDSLSDIFIWGEGIGNGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVQSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVHHPKLVEALGGLNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGIEATHWIPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHSSATIPQEVETLRGFRTTRVACGVWHTAAVVEVIIESVESSTSSSCKRLFTWGDGDKGQLGHADKKPRLVPECVIALSTENISQVACGHSLTIALTTSGRVYTVGSTAYGQLGCPASDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTLAVCLHKWIPSVDHSTCFGCRNSFNFRRKRHNCYNCGLVFCKSCTSKKSLKASLAPNASKLYRVCEDCYLKLKKSSESVPLVQTPSLRSVSLQENRTTKIQGTLLRLSSFGSILHTVSGQSKLPDSQDIHRSPASNGKLEMRGFASSKSSNSVFVDSKKHISFSEPVARISCQSSPVSSKSSPRELYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSKSLEAELERTSKQLKEVTTVAADEAGKCKSAKEVIKSLTAQLKEMVERLPEGHNADSSTELCAETTKNILDHSLDVSHIRNTIMLKNEGSSNVANLILPNGAKTQSGKAEWVVQDEPGVFVSLSPQPGGGNELKRVRFSRKHFTEEEAEKWWTENGSKILERHNIVAL 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Vian1g02547 1013 Coils Coil 873 893 - -
Vian1g02547 1013 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 889 - -
Vian1g02547 1013 SUPERFAMILY RCC1/BLIP-II 245 634 IPR009091 -
Vian1g02547 1013 SUPERFAMILY FYVE/PHD zinc finger 633 708 IPR011011 -
Vian1g02547 1013 SMART fyve_4 629 700 IPR000306 GO:0046872
Vian1g02547 1013 Pfam Transcription factor regulating root and shoot growth via Pin3 953 1008 IPR013591 -
Vian1g02547 1013 CDD PH_PLC_plant-like 12 122 - -
Vian1g02547 1013 ProSiteProfiles BRX domain profile. 954 1009 IPR013591 -
Vian1g02547 1013 MobiDBLite consensus disorder prediction 131 164 - -
Vian1g02547 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 705 IPR013083 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 580 IPR000408 -
Vian1g02547 1013 Gene3D - 370 466 IPR009091 -
Vian1g02547 1013 Gene3D - 183 369 IPR009091 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Vian1g02547 1013 Gene3D - 473 645 IPR009091 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Vian1g02547 1013 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Vian1g02547 1013 Coils Coil 810 865 - -
Vian1g02547 1013 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Vian1g02547 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Vian1g02547 1013 Pfam FYVE zinc finger 633 699 IPR000306 GO:0046872
Vian1g02547 1013 SUPERFAMILY PH domain-like 13 121 - -
Vian1g02547 1013 MobiDBLite consensus disorder prediction 140 159 - -
Vian1g02547 1013 Pfam Transcription factor BRX N-terminal domain 868 896 IPR027988 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Vian1g02547 1013 CDD FYVE_like_SF 642 695 - -
Vian1g02547 1013 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Vian1g02547 1013 Gene3D - 13 151 IPR011993 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 582 629 IPR000408 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 480 527 IPR000408 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Vian1g02547 1013 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Vian1g02547 1013 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Vian1g02547 1013 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02547 Vian-Chr1 36370915 36384074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02547 952 1010 Major Intrinsic Protein MIP AT1G31880 49.153 1.42e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02547 - - pvu:PHAVU_003G066900g 1551.57