Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02543 ATGTCTACCAGAAGATCTCGTTCCAGACAAACGCCAGTTTCCACTCAGATCACTGATGCTCAGATCACTGATCTCGTTTCCAAGTTACAGCACCTTATCCCTGAGCTTCGCGCAAGACGTTCCGACAAGGTGTTGCAGGAGACTTGCAACTACATAAAAAGCTTGCACAGAGAGGTTGATGACCTAAGTGACCGGTTGTCACAACTTCTGGCCACCACAGACTCCAACAGTGCCCAAGCAGCCATTATTAGGAGCTTACTTATGTAA 267 0.4757 MSTRRSRSRQTPVSTQITDAQITDLVSKLQHLIPELRARRSDKVLQETCNYIKSLHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02543 88 Gene3D - 19 84 IPR036638 GO:0046983
Vian1g02543 88 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 77 IPR036638 GO:0046983
Vian1g02543 88 PANTHER TRANSCRIPTION FACTOR PRE 1 88 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vian1g02543 88 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02543 Vian-Chr1 36158548 36159381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02543 1 88 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 64.894 5.52e-30 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02543 - - gmx:100791371 150.984