Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02537 ATGATGCCGCAAGATTTGAAGCAGCACCATAATGAAGAGTCCACGAAGAAGGAGCACAGTGAAGAATCTAAAAAGAAGGAACACAATGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCCGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCCGTGAAAAACCGTTTCTCCACACTCTGCAGAAAGAAAGAAAAATATGCAGCATTAGCAAAAGAGAACAGTACTTCTTACATCAATTCAAATAGCAAGAGAATTATGTTCCAACATTATAATAATATGGATACAACAGCTGAATCTGGAGTACCTATTAAAAGGATGAGGAGGTCCCATATCCCTGATGATGCAGAAAAGAGCGAATTTGGAGACCGATCACATTTACGAAATGGAACTCCAATAAATCAACAGCAAAGACCACCATTTGCAGTATTAGCTCAAAACTCTCATAACTCAAACAGCTTGCCAGACCATCAGCATGATTGCAGTCCCAAGTTCAATTCTGCCCAGGATGACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTATTGATGGAACAGGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTGATACCGAAAACGTGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCGAAACAAAGAATCAAACATTCCTGGTCACAAGATTTCAGATTTACGGCTTGTAGATAAAGATATCAATGAGGACTTGAAAAGCAGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACAATACGAAGATTCTCCAGCCAGTTCCGGATACAGTACAGAATCAACTTTCCTGGGTCAGTCAGCCGTTGATAAATCAGAGCACACATTGCATCAAGATATTGGAACTGAAATGAAGTCTGAACAGGTTGGAGATGAAAAAGGAGTAGACAAAGATGATAAAGAGGTTCTTTGTACTGCAAATGTAGATCAAGATGTACTGCCATATTGTGAGGAACAGATAAACAATGATGGAATTGTTTCTACCTCATCAAGATTGGAGTTCAACTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTCCTAAGGAAAACACTAGGAGTGGAATCTCCATCCATCAACCCAAGTGCTGACTCATCTCAACCACCACCCTGCAAAAGAGCCCTACTACCAAGTCTATGA 1467 0.4063 MMPQDLKQHHNEESTKKEHSEESKKKEHNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNSKRIMFQHYNNMDTTAESGVPIKRMRRSHIPDDAEKSEFGDRSHLRNGTPINQQQRPPFAVLAQNSHNSNSLPDHQHDCSPKFNSAQDDQIQGTFLKRDDPKRSVLMEQAELLSSLALKVDTENVDQSLEHTWKVLQEFLNRNKESNIPGHKISDLRLVDKDINEDLKSSNEEGQACWRQVEQYEDSPASSGYSTESTFLGQSAVDKSEHTLHQDIGTEMKSEQVGDEKGVDKDDKEVLCTANVDQDVLPYCEEQINNDGIVSTSSRLEFNSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVESPSINPSADSSQPPPCKRALLPSL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02537 488 MobiDBLite consensus disorder prediction 1 37 - -
Vian1g02537 488 MobiDBLite consensus disorder prediction 188 213 - -
Vian1g02537 488 ProSiteProfiles Myb-like domain profile. 42 85 IPR001005 -
Vian1g02537 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
Vian1g02537 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Vian1g02537 488 Gene3D - 93 163 - -
Vian1g02537 488 Gene3D - 29 90 - -
Vian1g02537 488 Pfam Myb-like DNA-binding domain 42 102 - -
Vian1g02537 488 PANTHER MYB PROTEIN-RELATED 41 221 - -
Vian1g02537 488 SMART sant 90 138 IPR001005 -
Vian1g02537 488 SMART sant 38 87 IPR001005 -
Vian1g02537 488 CDD SANT 41 85 IPR001005 -
Vian1g02537 488 MobiDBLite consensus disorder prediction 463 488 - -
Vian1g02537 488 FunFam Transcription factor MYB124 34 90 - -
Vian1g02537 488 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Vian1g02537 488 SUPERFAMILY Homeodomain-like 38 132 IPR009057 -
Vian1g02537 488 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02537 Vian-Chr1 35979353 35983939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02537 28 336 MYB Transcription Factor Family AT2G02820 58.599 3.85e-127 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian1g02537 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02537 K09422 - gmx:100807667 663.685