Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g02530 | ATGGGAAGACAGAGTCCTGGAAAATGGATCAGAAACTTGCTTCTGGGGAAGAAATCGTCGTCAAAGTCTAAGTCTTCAAGAGAGAAAGATATTTATAAACCTTCAAGTACCAAGGATGTTCTGGCGGTGTCTTCGGAGACATCCATGTCTTCTTCCATATCTGGTGCAAATGCTATTAAAGGAAAACTATCAGAAAAGGAAGTAATTAGTGTATCATCAAATGATGGGATCATTCTTACAACTGAAGATGAGCATGCCAATGGACAATCTCATGATAATTTTTATTCTGAGGACCGTAATGAGAAAAGCAGGCTAATAAAAACAGCAATAATAACAATTCAGGCTGCAATTAGAGGATATCAGGCGCGAGGGACATATAAAACTGTAAAAGATATCATTCCACTGCAAGCTTATATTCGTGGCCAGTTGGTTCGAAGACAAGCTATTTCTGCTTTGTATTGTGTGAAGTCAATAGTAAGATTTCAAGCATTGGCCCGTGGTTACAAGGTTAGGCACTCTGATATTGGCCTTGCAGTCCAGAAACTTTTGAAGGATACTAAATTCTCGAAATCTACTGGAGTAGTTACATCTACACAGGCAGTGAAGCTCTCAGATAAGACCTTTGCTCACAAGCTTCTGGCTTCATCACCCTATGCTGTTTCTCCACGTCTCAAATATAATACTGGTGAACCTAACTTGGTTTGGGAATGGCTTGGCCGTTGGACGAAATCACACTTTTGGGTACCTCTTCAAGAAGCGCAGAGATCTGATTCAGTGTCTGATAAGAAAAATGGAAGTTCTCAAACTGTAGAAACTAATAAGGGACAAGTTAAAAAAAATGCCAGGAAAGGAACTCCTCATGATTTAGTCTCAGATTCCAACAAACATAAACGGTATCCAAAAAAGGATTCAAACCCCGCATTGCATTCAGCTAAGGAACATCCACCAAAGGAACTTGAGAAAAGGAGTTCTAAAAAATCTCAAATTCAGAATGTTTCTGATAAGTCGGAGGCTTCTGATGAGAAGAGAAGACTCATGGTAAGAAAAGTTTCAGATCATACAAAAGTCAATGATGTTCCAGAGGAGGATGCTGGTGCTTCATCAGAGAAGATGAAATATTTGGCAGTGTCAAAGTCAGAAGAGTGTGATCTTGGGAAAAGTCTTATACAGCAAGCACAAGAGCATGATAATAATGAGCCATGTAATGGTACTAATTCTCCCTTGCAGCCTAGTTTGATGAATAGTAAAGATGGAGGAGTGATTGAGGAGTTGAATGATGTGAAGAGTAAGAATTTCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTACAGATCTTGAAAATGTGTTGCATGATAACACTCCAAGACTTCCAAGTTACATGGCTCCCACTGAATCTACAAAAGCTAAGCTAAGAGGACAGTGCTCTCCACGGTCTGTTAGTGATCTGGCAGATGTAAGCAGAATAACTCGCCGGCTTTCGCTTTCATCTTCGCTTAGTGTCAAGCTAGGTTCATTCTCTCCACGATCAGATAGATTGGCTGCCTTGACCAACAAGATAAGGACTGACAGATCTCTATCATCTTCAAGGGATGGAACTCATAAGTTGAATCAACCTCAGTGGAGAAGGTGA | 1629 | 0.4039 | MGRQSPGKWIRNLLLGKKSSSKSKSSREKDIYKPSSTKDVLAVSSETSMSSSISGANAIKGKLSEKEVISVSSNDGIILTTEDEHANGQSHDNFYSEDRNEKSRLIKTAIITIQAAIRGYQARGTYKTVKDIIPLQAYIRGQLVRRQAISALYCVKSIVRFQALARGYKVRHSDIGLAVQKLLKDTKFSKSTGVVTSTQAVKLSDKTFAHKLLASSPYAVSPRLKYNTGEPNLVWEWLGRWTKSHFWVPLQEAQRSDSVSDKKNGSSQTVETNKGQVKKNARKGTPHDLVSDSNKHKRYPKKDSNPALHSAKEHPPKELEKRSSKKSQIQNVSDKSEASDEKRRLMVRKVSDHTKVNDVPEEDAGASSEKMKYLAVSKSEECDLGKSLIQQAQEHDNNEPCNGTNSPLQPSLMNSKDGGVIEELNDVKSKNFQRRASLPANFTDLENVLHDNTPRLPSYMAPTESTKAKLRGQCSPRSVSDLADVSRITRRLSLSSSLSVKLGSFSPRSDRLAALTNKIRTDRSLSSSRDGTHKLNQPQWRR | 542 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g02530 | 542 | ProSiteProfiles | IQ motif profile. | 106 | 134 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | Pfam | Protein of unknown function (DUF4005) | 451 | 512 | IPR025064 | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 395 | 416 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 276 | 328 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 520 | 542 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 253 | 370 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 395 | 413 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 12 | 44 | - | - | |
| Vian1g02530 | 542 | Pfam | IQ calmodulin-binding motif | 156 | 171 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | Pfam | IQ calmodulin-binding motif | 109 | 123 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | Pfam | IQ calmodulin-binding motif | 135 | 147 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | PANTHER | IQ-DOMAIN 5-RELATED | 1 | 496 | - | - | |
| Vian1g02530 | 542 | SMART | iq_5 | 153 | 175 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | SMART | iq_5 | 105 | 127 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | SMART | iq_5 | 128 | 149 | IPR000048 | GO:0005515 | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 335 | 370 | - | - | |
| Vian1g02530 | 542 | Gene3D | - | 106 | 151 | - | - | |
| Vian1g02530 | 542 | MobiDBLite | consensus disorder prediction | 253 | 275 | - | - | |
| Vian1g02530 | 542 | ProSiteProfiles | IQ motif profile. | 130 | 157 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g02530 | Vian-Chr1 | 35892140 | 35895987 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g02530 | 1 | 542 | IQD Protein Family | AT1G14380 | 31.810 | 4.39e-55 | 193 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g02530 | - | - | vun:114179925 | 839.336 |