Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02529 ATGAAGAACCTGAGGGTTTGTTTCACTTACTTTTTTCTTGCAATCGTTCTTGTTCTGCTTACTCCTTCCTCGGTTGCACAGCTATCAACAAGTGAGAATAGAATTCTATTCCAAGTTCAGAAGCTTCTTGAATATCCTCAAGCTCTTCAAGGGTGGACAAGATGGACCAACTTGTGCTTCCTCCCTCCCTCTTCTTCCCTCAAGATAGTTTGCTCAAATGGTCATTTGACAGAACTAACTATCATTGGAAACAAGACCTCCCCATCTTCACACAATCCCCAGGCAGGTTCCTGGACTTCCCTTCAAACACTTTCAGGAAAATTCTCCATCGATTCTTTCTTCACTGTCATGACAAAGCTTTCAAATTTGAAGGTGTTGTCCTTAGTGTCCTTGGGTTTGTGGGGTCCTTTACCATCCAAAATCAACAGGTTTTGGTCCCTGGAAGTGCTAAACATTAGCTCAAATTTCATTTATGGGGAAATTCCACCATCCATATCCTCAATGATGAATCTAAGGAGTCTCGTTTTGGTTAATAATCTCTTCAATGGAAGTGTCCCTGATCTCCAGAGATTAACTTCTCTTGAAGAGCTCAACTTGGGAGGTAACAAACTGGGTCCTGAATTCCCTTTAGTGGGAAAGAATCTTGTCACTATAATCTTGAGAAATAATTCACTGAGATCTCGTATTCCTCCAGAGATTGAACACTTCGACAAACTTCAGGTATTTGATGTATCTTCCAATGATGTTTTTGGAAACATCCCGTCCTTTCTTATGTCTATGCCTTCCCTTCATTCCCTAAACTTGGCTGCAAACCATCTAAGTGGTAACCTCTCAGTGAATAAGGCATGTAGTTCTTCACTAACATTTGTGGATATCTCACACAACCTTCTGGTTGGAAAATTGCCTGCGTGCCTTGGTTCAATGTCTTCAAAGGCCACAGTACTATATTCTGGAAATTGTTTCTCAACCAAAAGCTTAAATAATCAGCATCCATCTTCTTTTTGCAAGAGAGAGGGAGCTTTAGCTGTTAAGCCTCCAGCTAAAAAGCCGCGGAATGATTCAAATTCGGGTGCCAAACTAGGCGTAGTGATTGGAATAATTGGAGGAGCTGTAGTAATTGCTGGACTTCTGGTTTTTCTCATTGTGTTCATCTTTAGAAAGACCAATGGAGAAAGATCACATCATAAAATGGACAAATCTGTTGCTAATAAATATTCTGCCAGTGCATCTCCTGGACCAAACGGTACAATGTGCATTAATCTGGTTTCTCCTGCGGGAGTAGGACATATTCCTCAGGCCATGAAGCAAGCTGCACTTGGACTTCCACCATACCGTATTTTCACATCAGAGGAAATTGAAGATGCAACAAATAACTTTGACCCATCAAATTTAATAGAAGAGGGATCACAAGGACAGCATCATGCAGCAAATAGAGGTATTACCCAATTTGAGGCACAGGCACATGGACACTGTATCATTACTGAACAGGAACATCCCCAAACAACAAGCACAGTCTTCATCGTATTTGAGCACATCTCAAATGTGTCGTTAAGGGATCAACTTGCAGATGGGAGAAAGAGGGAAATGCTGAAATGGCCACAAAGAATGGCAATGAGCATAGGCATTGCAAGAGGAGTCCAGTTCTTACACACAGGAGTTGCTCCTGGCATATATGGCAACAATTTAAAGATTGAGAACATTCTGTTGGATGATAGTCTCAATGCAAAAGTTAGTAGATACAGTATTCCATTGCCATCCAAGAGTGCACATAATGAACACATTGCCACCAATCATATGGGCAGCACAAATAATGCAGAAAAGGAAGACATCTATCAGCTGGGCGTTATTCTTCTTGAAGTTATCACTGGCAAAGAAATTGCTTCCCCTAGTGAAATAGAGGAGATGAAGGATGAGCTGGAGAATGGTTCATCAGAAGCAACATCAGTACTTAAAAGTGTAATTGATCCTTCACTGCGAGGAACTTATGCTTATGAATCAATGAAGACTGCAATTCATATTACCATCAACTGTCTCTCCAAGGTCTCTAGCCAGCGTCCTTCAATAGAGGATGTTCTTTGGAATTTACAATACTCAATGCAAGTTCAAGAGTCATGGACCAGCAGTGGAAACCTCAGCACAAAGTTGTAA 2148 0.4111 MKNLRVCFTYFFLAIVLVLLTPSSVAQLSTSENRILFQVQKLLEYPQALQGWTRWTNLCFLPPSSSLKIVCSNGHLTELTIIGNKTSPSSHNPQAGSWTSLQTLSGKFSIDSFFTVMTKLSNLKVLSLVSLGLWGPLPSKINRFWSLEVLNISSNFIYGEIPPSISSMMNLRSLVLVNNLFNGSVPDLQRLTSLEELNLGGNKLGPEFPLVGKNLVTIILRNNSLRSRIPPEIEHFDKLQVFDVSSNDVFGNIPSFLMSMPSLHSLNLAANHLSGNLSVNKACSSSLTFVDISHNLLVGKLPACLGSMSSKATVLYSGNCFSTKSLNNQHPSSFCKREGALAVKPPAKKPRNDSNSGAKLGVVIGIIGGAVVIAGLLVFLIVFIFRKTNGERSHHKMDKSVANKYSASASPGPNGTMCINLVSPAGVGHIPQAMKQAALGLPPYRIFTSEEIEDATNNFDPSNLIEEGSQGQHHAANRGITQFEAQAHGHCIITEQEHPQTTSTVFIVFEHISNVSLRDQLADGRKREMLKWPQRMAMSIGIARGVQFLHTGVAPGIYGNNLKIENILLDDSLNAKVSRYSIPLPSKSAHNEHIATNHMGSTNNAEKEDIYQLGVILLEVITGKEIASPSEIEEMKDELENGSSEATSVLKSVIDPSLRGTYAYESMKTAIHITINCLSKVSSQRPSIEDVLWNLQYSMQVQESWTSSGNLSTKL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02529 715 Gene3D Transferase(Phosphotransferase) domain 1 512 710 - -
Vian1g02529 715 Gene3D Ribonuclease Inhibitor 214 345 IPR032675 -
Vian1g02529 715 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Vian1g02529 715 SUPERFAMILY L domain-like 29 322 - -
Vian1g02529 715 SUPERFAMILY Protein kinase-like (PK-like) 440 695 IPR011009 -
Vian1g02529 715 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 512 711 - -
Vian1g02529 715 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 696 - -
Vian1g02529 715 ProSiteProfiles Protein kinase domain profile. 419 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02529 715 SMART serkin_6 459 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02529 715 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 29 213 - -
Vian1g02529 715 Pfam Protein kinase domain 489 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02529 Vian-Chr1 35868792 35871842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02529 24 673 Miscellaneous Gene Families AT2G02780 42.796 6.55e-155 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vian1g02529 Pkinase 4.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02529 - - gmx:100803061 1097.03