Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02527 ATGGAAAACAATTTGAGGGTTTTGTTCCTTGCAGATGGTTTTGCGTCATCCATGGAGGTTAAACAAGTTCAATGGTGGTGCAATTTGAGATTTAAACAGGTTTTCACGGAAGAGATGATATATGTTGCACAACCTATTGCGATGAAGAAACTCTGTTACGATTTAGGAGTTGAACATGATTTGAGCGAGTTAGGGTTTGGTTCAAAAAGATTTGGGATTGTTGCGCAAACTAGGGTTCTTGTGAAGTTGGAATTCTTTAGTTCACGTGGAGAAGATGATGGCCTGAGTCTGGTGCATAATGACGTGCTGATGGAAGGAAAATTGGGGTTTCTGATTTGGAGAATATGGTCTTTGATCTGTTACAACATGCAGGATCATAAGCTTGAAAGGGAAATGCGAGAGGTTGGAGAACTTTCATTGGTAAGGCTGGTAAATGATTCAACTAGTGATGAAGAAAGTGAACTTGTTTCCCTCTCTCTTGGAATTTCATCTACAGGTAAACATGAGAAGAAGATTAGAACTGAAAATAGTAGAGAAAATGAGGATTTGAAAGAAGGACTTTCACTTGGATTAGGTATACGATTTGACCCTTCAGCTATACAAAATCAAAGCACTGAAAGTAGGTGTGATGGGGAAATGAAGGAAGAGGAACTCAGAGAGATATGGCCACCCAGTAAAGTTCTCAAGACAATGAGAACTTGGGATAAAAGTGAAGCTTCTCAACATGCTGAAGTCAAGAAGGCTAGGGTTTGTATCAGAGCAAGATGTGATAATCTTACGATGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCATGTCCCCGAGCATACTATCGATGCACTGTTTCTCCATCCTGTCCTGTGAAAAAACAGGTTCAAAGATGTGCTGAAGACATGTCAATCTTGATTAGCACTTACGAAGGAACTCACAACCACCCTCTTCCTACTTCAGCCACTACCATGGCCTACACAACTTCTGCTGCTGCTTCCATGCTTCAATCTCCTTCATTGACCACACAACTAGGACTACTCAATTCAGATACTGTCCCTCTCCTCAATTCTAATGTTCTTTATAACCTTAATGCCCTAAATTTCACATCAAGCTGTCACCATGTTTCAAAATCACCACACTTATTCTTCCACAGCTCCTCTATTTCTACCTCTAGTTCTCACCCCACAGTCACTCTTGACCTTGCCACTCTTCAAACTTCACCTCACATTGGAAATTTCACCCCAAGCTTGTCTTTCATACCAAAATATTCATCAACCAATGTTGATTTTCCCTCGAGTACTTTCTCTCCTTTGCAATCTAGTGTGCTACATTCACCTTGTTATGGTGATTACTTCAACTATGAGGGATTGATCACCCCAAATAGAAACCTTAACGGTTCCCATATGAACACTGGAAAACAACCATTCCTGGGACATCTTTGTCGATCTAATAACATTACCAACCATGCAGTTTCTAAGCAATCTTTACCTGATTCCATTGTAGCTGCATCCAAAGCAATCACTGCTACCCCAAAATATCAATCTGCTATATTAGCAGCTGCCCTCACAGCTTATGCTGGTAATGGGCTAAGAGAAAATCATGATGAGGCCCAAAGTGCCGGTTTGGACTTAAATCTAGGTGGAGATATGCCATACACAACCAAGACAATTTACCCAAATTCTAATGCATCAAGGGCATCAGGAAGTGCATCCGCTTCCAGTTATGAGGACTTTGAATCAGCTGAAGGGTGGCTAGCAGATTGCTTTGCGGATGCTGAAATGCAATTATGTCCTGATGATTTGAATTTTTCTGGGGCTGATGATGTTCACATTGATGTTGCAAGTAGGAATTTTTCTGCCTGCCATTTACTCTAA 1887 0.4081 MENNLRVLFLADGFASSMEVKQVQWWCNLRFKQVFTEEMIYVAQPIAMKKLCYDLGVEHDLSELGFGSKRFGIVAQTRVLVKLEFFSSRGEDDGLSLVHNDVLMEGKLGFLIWRIWSLICYNMQDHKLEREMREVGELSLVRLVNDSTSDEESELVSLSLGISSTGKHEKKIRTENSRENEDLKEGLSLGLGIRFDPSAIQNQSTESRCDGEMKEEELREIWPPSKVLKTMRTWDKSEASQHAEVKKARVCIRARCDNLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVKKQVQRCAEDMSILISTYEGTHNHPLPTSATTMAYTTSAAASMLQSPSLTTQLGLLNSDTVPLLNSNVLYNLNALNFTSSCHHVSKSPHLFFHSSSISTSSSHPTVTLDLATLQTSPHIGNFTPSLSFIPKYSSTNVDFPSSTFSPLQSSVLHSPCYGDYFNYEGLITPNRNLNGSHMNTGKQPFLGHLCRSNNITNHAVSKQSLPDSIVAASKAITATPKYQSAILAAALTAYAGNGLRENHDEAQSAGLDLNLGGDMPYTTKTIYPNSNASRASGSASASSYEDFESAEGWLADCFADAEMQLCPDDLNFSGADDVHIDVASRNFSACHLL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02527 628 Pfam WRKY DNA -binding domain 262 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02527 628 Gene3D WRKY domain 246 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02527 628 FunFam probable WRKY transcription factor 31 246 323 - -
Vian1g02527 628 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02527 628 SUPERFAMILY WRKY DNA-binding domain 255 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02527 628 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 134 537 IPR044810 GO:0003700
Vian1g02527 628 SMART WRKY_cls 261 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02527 Vian-Chr1 35796171 35805240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02527 147 409 WRKY Transcription Factor Family AT5G15130 48.387 1.55e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g02527 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02527 - - vum:124844927 909.442