Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02526 ATGTCCAACTTGCAGTTTCAACTGCACTCTCAACCATCAATCTTGTCATCTTTGTCTTCATTATCGTCTTCTTCTCTTAAGCTATTAGCAAACCACTCTTTCTCCTCAAATTCTCTTCCTTTTAACCCTCCTAAACCCTTTTCCCTCAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCCTCCTCACAACGACCCACAAGACCCACTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCAGTGGGTGAAATGGGAAGTGTAATAAGCCTTGGTACAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTAAGGGCAAAAGATGTCATGAAGTCAATACAGATTTTTGTTTTCTCGCATGGAGAACATTTCCTGCCTTCGCAAATTTTATCATGCCATACCTTCTTGGTTGGCATACCTTTGCAAACTCGATAAAGCCAGAGGACACTAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGTGATTATGAATGGAACAGATAG 696 0.4411 MSNLQFQLHSQPSILSSLSSLSSSSLKLLANHSFSSNSLPFNPPKPFSLRCRHSDLFDQNTLASSQRPTRPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPFKGKRCHEVNTDFCFLAWRTFPAFANFIMPYLLGWHTFANSIKPEDTSGVNNANPRYGGDYEWNR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02526 231 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 231 IPR009044 GO:0003677|GO:0006355
Vian1g02526 231 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 190 231 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian1g02526 231 Pfam Whirly transcription factor 88 171 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vian1g02526 231 Gene3D Transcriptional Coactivator Pc4; Chain A 72 180 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02526 Vian-Chr1 35776295 35779103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02526 21 231 Whirly Transcription Factor Family AT1G14410 49.194 8.89e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vian1g02526 Whirly 1.1e-35 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02526 K26559 - gmx:100789252 321.627