Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02525 ATGATTTCCAACCAAATCCACGCGTTTCGCTCTGCATTTCGCGTTCTCAGATATCCATGCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTTCATCCTAACACACCAACCACCCTTTTTGGGCTACAATCCTCCAGAGGAACTGTTCGAGCTGGAGGTGGAGCTCAAACCAAGTTTCCTTGTAATGCACATATGATGTCTATTAAGGTTTATCTGTTTCTTATGTTCAGTTCACTCAGCATAGAAAATCTTTTGTACTTTTGGTCCTGGGGATTGTGTAAACAAGAGCTAGCTTTAAACAAACAAGGCAAGGGTAAGTCTCATGCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTGCCTTGTCCGAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCCACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGGGCCCATTCTATTTCCCCACTCAAAGTGAAGGAAGATGATGAAGTTGACAGATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAATCACCACCTCCAGAAGTTGGACTGAAGATTAGTCGTTCATTAAAAAGTCTGAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGGAGACACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAGGGAGTAAAATTCTACTGCCAAAACTGTGGACGTGAAGGGCATAGGAGATACTACTGTCCAGAACTCAAGGATACCTCTATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAAGGTCACAACAGAAGAACATGTAGAATGATGGTAAGCCATAGCAATGAGAGACTGATAAAACAGCACCAGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACGTGTAGGACGTTAAGGATAAGCCTTAGAAAGGGGAGAGTGATAAAACACCGAAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGAACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGTCTCTCGAAGGCAATACAAGTGTAGGTTGTGCAAGAAAAAGGGTCATAACAGTAGGACATGTCCAAGTAAGACAGATGTTACTGAACAACCTCAAGATTAA 1344 0.4375 MISNQIHAFRSAFRVLRYPCTNSPNARPLLLLHPNTPTTLFGLQSSRGTVRAGGGAQTKFPCNAHMMSIKVYLFLMFSSLSIENLLYFWSWGLCKQELALNKQGKGKSHAPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDRLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAFFSDPINRQKRSMAMKGVKFYCQNCGREGHRRYYCPELKDTSIDRRFTCRVCGEKGHNRRTCRMMVSHSNERLIKQHQCRVCGEKGHNRRTCRTLRISLRKGRVIKHRKCKVCHQFGHNRRTCPEVVPSKRNTVSRRQYKCRLCKKKGHNSRTCPSKTDVTEQPQD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02525 447 ProSiteProfiles Zinc finger CCHC-type profile. 360 374 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 112 344 - -
Vian1g02525 447 ProSiteProfiles Zinc finger CCHC-type profile. 303 318 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SUPERFAMILY Retrovirus zinc finger-like domains 300 345 IPR036875 GO:0003676|GO:0008270
Vian1g02525 447 ProSiteProfiles Zinc finger CCHC-type profile. 330 344 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 Gene3D - 386 446 - -
Vian1g02525 447 Gene3D - 300 354 - -
Vian1g02525 447 SMART c2hcfinal6 359 375 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SMART c2hcfinal6 329 345 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SMART c2hcfinal6 390 406 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SMART c2hcfinal6 421 437 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SMART c2hcfinal6 302 318 IPR001878 GO:0003676|GO:0008270
Vian1g02525 447 SUPERFAMILY Retrovirus zinc finger-like domains 410 443 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02525 112 405 C2H2 Transcription Factor Family AT5G20220 65.789 1.78e-139 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02525 - - var:108323927 793.497