Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02511 ATGGCTGGTGAGAAGCTGAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCATATCCAAACCTTTTGGGTTCAAAACTCTCAACCTTCTTTCCAAGGCTCAAAATCCTTGGTTAATGTTGTGAATGTGAGGGATAGACCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGATGATGATGAGGATTTTGAGGTATTCCCACATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGATGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAAAGACTATGGCATGCTGAAAGCTCGCTTTGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGCCAAACTCAAGGAAGAGGTTTATTCTCTGAAGAAGGTGATTCCCAGAGAGAAAGAGAAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGGGCATAAAGAGCAGAAGGATTTGATCATAAATGGAGGTTCTGAAAATGAATCCAAAGTGGCACTTCCTGTTATGGTAATAAGCAAACAGAAAGATGCTAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCACTGACGGAAACCAATCCTCAATCTTTGAGCCTGCAGATTCCTCTCATGCTCTGGAACCAGACCACTCGGATTTCTCACAGGATGAGGAAGACATCCTCAGCCAAAACATGCCACTCCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTTCACGTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA 957 0.4378 MAGEKLNGGSSMTLLLQKERLPCSPEHIQTFWVQNSQPSFQGSKSLVNVVNVRDRPFFRGVEREENDDDEDFEVFPHQPGKKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARFDILKRDYDNLVQENAKLKEEVYSLKKVIPREKEKQNLDDTSCDAVNSGHKEQKDLIINGGSENESKVALPVMVISKQKDANSAKSDVLDSESPHFTDGNQSSIFEPADSSHALEPDHSDFSQDEEDILSQNMPLLPKFEVEYVCYDEPPENPFTFRFPVEDQTFCFWSC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02511 318 Pfam Homeobox associated leucine zipper 136 175 IPR003106 GO:0006355|GO:0043565
Vian1g02511 318 FunFam homeobox-leucine zipper protein ATHB-6-like 84 130 - -
Vian1g02511 318 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Vian1g02511 318 MobiDBLite consensus disorder prediction 231 273 - -
Vian1g02511 318 CDD homeodomain 79 137 IPR001356 GO:0003677
Vian1g02511 318 Gene3D - 76 141 - -
Vian1g02511 318 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Vian1g02511 318 SUPERFAMILY Homeodomain-like 69 138 IPR009057 -
Vian1g02511 318 MobiDBLite consensus disorder prediction 231 256 - -
Vian1g02511 318 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Vian1g02511 318 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Vian1g02511 318 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Vian1g02511 318 SMART HOX_1 78 140 IPR001356 GO:0003677
Vian1g02511 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 243 IPR045224 GO:0003700
Vian1g02511 318 Coils Coil 149 176 - -
Vian1g02511 318 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02511 Vian-Chr1 35352952 35354421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02511 22 185 Homeobox Transcription Factor Family AT3G01470 49.701 4.44e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian1g02511 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02511 - K09338 gmx:100804328 489.189