Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02490 ATGGATCCGGGTGGGATGATGAACGAGGGTTCCTTTGCGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCCCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGAACATGGGCCGGGGCAGTTTGGGGATTTGCCTCCCAGGCCCAACAATGGGCTTGGGACGAGTAACACCAGAAAGCGGCGAGACTCAGAGGACGATTCAGCTAAGACCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGCAAATGGTGATGGTGATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAGCCTCCTTTGGAACCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTGATAAGGTTATCGGGAAAGCGTTGGTCCTTGATGAAATAATTAATTATATCCAATCTCTCCAGCGCCAAGTTGAGGATTTTGATGTTACTGGATGGATGTCACAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATTGAAGCCTTTCCTCCTAAGGATTTTGGTCAGCATGCATATGATCCCGCGGGCATGCCGTTCGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGATCTTCACCTGAATGGTTACACATGCAGCTTCCAGAAACAGGCATGATAGACTCAAGAAGCAAGTCCAATGGGCACCTCATTCCCATTTTCTACACTAGGCATGGAGCTGTTACTGTGTTTCACAGGACTGCTTCAGTTTTTATTTAA 921 0.4929 MDPGGMMNEGSFANNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFEHGPGQFGDLPPRPNNGLGTSNTRKRRDSEDDSAKTVSTSNAVNEGDGKRVKATANGDGDGKGEGEVSSGKPAEQSAKPPLEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCDKVIGKALVLDEIINYIQSLQRQVEDFDVTGWMSQFLSMKLEAVNSRLNSGIEAFPPKDFGQHAYDPAGMPFGSQAPREYSRGSSPEWLHMQLPETGMIDSRSKSNGHLIPIFYTRHGAVTVFHRTASVFI 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02490 306 MobiDBLite consensus disorder prediction 99 115 - -
Vian1g02490 306 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Vian1g02490 306 CDD bHLH_AtBPE_like 135 230 - -
Vian1g02490 306 Gene3D - 142 223 IPR036638 GO:0046983
Vian1g02490 306 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g02490 306 SMART finulus 151 201 IPR011598 GO:0046983
Vian1g02490 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 203 IPR036638 GO:0046983
Vian1g02490 306 FunFam Basic helix-loop-helix transcription factor 142 224 - -
Vian1g02490 306 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 250 IPR024097 GO:0006355
Vian1g02490 306 MobiDBLite consensus disorder prediction 34 133 - -
Vian1g02490 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02490 Vian-Chr1 34950324 34952207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02490 1 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 59.036 2.02e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02490 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02490 - - gmx:100784478 438.728