Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02488 ATGTCGCCGGAAAGAGACGTCATATTGGCGACGCCAGGAGCGTTCCGGCTGCGGTGGGACGTGTTCCTGAGCTTCAGAGGCACCGACACGCGCGGCACTATCACGAAAGGTCTGTACAAGAGTCTGCAGACGCGTGGGGTTCGCGTGTTCCTGGACGACGAGGGGTTGGAGCGTGGGGAAGCGGTAGCGAATGGGCTGATGAAGGGAATTGATGACTCTGCAGCGTTCATCGTCATCTTATCTGAAAACTACGCTTCTTCACACTGGTGTCTTGAGGAACTCACCAAGATTTGCGACACCGGTAGACTCCTCTTGCCCGTTTTCTACCGGGTTGACCCGTCGCAGGTCCGACACGTATCGGGTCCCTTCGGATCGGGTTTCGAATCGCATGAAAAAAGGTTTGAGAAAAATACGGTTTCAAAATGGAAGGAAGCGTTGAAGAAAGTTGGTGGAATTGCTGGTTGGGTTTTTAATCACAGTGAGGAAAATGATCTGATTCAGCGTTTGGTGCGAAGGGTGTTGAAAGAGTTGAGTAACACTCCTATGGGTGTGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGGAAGTTTTGCAAGTTCAATCCAATGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCCCTTTTCAATGCCCTTGTTAACCGTTTTGAGCATCGTTGCTTCATTTCCGACGTGAGACAAGTTTCATCAAAACACGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTTTTTCCTGGAGCAGGGTCTCCCTCCATCGGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGTCGAGTTAGTGAGAATCGAGTTTTACTAGTCTTGGATGATGTTGATGAAGTGAAGCAGATTGATGCTTTGATTGGTAAGAGGGAATGGTTTTACGATGGAAGCTGTGTGATAATCACAACACGGGATACAAAAGTTCTAACTCAGAATCATGTAACTGTGTCGTATGAAGTTAGAGAGTTGTATGCTTCTGAAGCTCGAGAGTTATTCAGTTATCATGCACTGAGAAGAAGTGCACCACCAGAAAATCTTCTGAGTTTATCAGAGGAGATAATATTCCTGACGGGAAAAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGTAAGAGGAGGGAGGAGGAATGGGAGGATGCTGTGAAGAAGCTAAGGCTAATTCGCCCTCACGATCTTCAGGATGTGTTGAAGATAAGTTACGATGGTTTAGATGAAGAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTACAAAAGAAAATGAAGCGTGATGGTGTGATTGATGTGTTAAGAGGTTGTGGTTTCAGGGGTGAGATTGCTATCACGGGAACTAGATGCGTTCAAGGTATTGTACTTGATTTTGAGGAAGAAAGGTTTTATAAGGGAAAGTTCGGATCAGTTTTTCCGAAGAAGTTTCAATGGAGACCAAGTTTAAGAAATATATCATGTTACATCAAACAATGCCTTAAGAATCATCCTGAACCTCAAGCAGAGGAAAACACAGAGTTTGTACTTCACACGAAATCCTTTGAACCAATGGTTAATCTGAGACAACTTCAGATCAACAATCTGAAATTACAGGGCAAGTTTCTTCCATCTGAACTGAAGTGGTTACAATGGCAAGGGTGCCCTTTAGAACGCATGCCTTTGAAATCTTGGCCAGGAGAGCTGGCTGTCCTTGATCTCAAAAACAGCAAGAAAATGGAAACCTTGTGGGGATGGAATGGTCACAACAAGGTGCCACAGAAGTTAATGGTCTTGAACCTCTCCAACTGCATCCAACTCACTGCTATACCTGACTTATCTGGGTGTCAATGTCTAGAGAAGATTGATTTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCAAGTTGCCCCAGTCCATTTTTCGCCTCACGAAGCTTGAGCAGCTTGTTTTAAAACGTTGCCAATATTTGAGAAGACTACCTAATTCTCTAGGACACCTATGTTCTTTGCAAGAATTATCTCTATATCACTCTGGGTTGGAAGAATTACCCGAGTCTGTGGGATCGTTAACTAACCTGGAGACACTCAATTTGATGGGGTGTGAATCTCTCACTGTTATTCCTTATTCTGTAGGGAATCTCATGTCATTGACAGAACTTCTGGTTGATAGAACTAAAATTAAGGAACTCCCTACAACTGTTGGTTCTTTATCTTACCTGAGGAAATTATCAGTTGTAAACTGTAAACTTCTCACCCAATTGCCAAATTCAGTTAAAACGTTGGCCTCAGTTGTGGAACTTCAGTTAGATGGAACAGCCATCACAAATTTGCCAGCTGAGATTGGAGAGATGAAGCTGCTGAGGATACTTCAGTTGATGAATTGTAAAAATCTTGAATACTTACCAGAATCTATTGGCCACCTAGCATCTCTTACTACATTGAACACGGACAATGGAAATATCAAAGAATTGCCGGAATCCACTGGACGGCTGGAAAATCTTGTCAACTTAAGATTGAACAAATGCAGAATGCTCAGAAAGCTTCCAACTTCTATAGGAAATTTGAAATCTCTATATCACATTTTCATGGAGGAAACATCTTTGTCAAGCTTACCTGAAAGCTTTGGGATGCTGTCAAGCTTGAGAACATTGAAAATGGCAAAGAGGCCTGAATTAGATACCAATGAAAGTAGCTTCCTTGCAGAACCTGAAGAGAACCATAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCCCGTGCATGGAAAATATCTGGGAAAATTCCTGATGAATTTGAGAAGTTGTCACTATTGGAGACTTTGAAATTAGACAGGAATGATTTTCACAGCCTGCCGTCCAGTTTGAAGGGCCTTTCTATCCTCGAGGTCCTTTCACTGTCAAACTGCACTCAGCTGAACTCTCTCCCCTCACTTCCTTCAAAGCTGATTAAGCTGAATGTTCAAAACTGTTCTTCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAATCTCACAAACTGTGTAAAACTGGGGGATATTCCGGGTCTTGAAAGCTTGAAGTCCTTGAGAAGGTTGTACATGAGTGGTTGCATTGCATGCTCCTCACAAATACAAAAGAGACTTTCGAAGGTTGCACTGAGGAATTTACAGAACTTAAGCATGCCTGGAAGCAAATTACCTGAATGGTTTACTGGGCAAACTGTGAGCTTTTCCAAGCGTAAAAATCTTGAGCTAAAGAGTGTACTTGTTGGTGTTATTATTTCAATCAACCACAGCATTGACATACCCAACATGAAGAGAGATGATATGCCAGGCTTGATTGATGTTGAAGCAAATGTTCTCAAAGGGGGAAGAACTCTGTTTAGGACTGTGTTAAACATCTGTGGGGTGCCTAGAACAGATGAAGAACACATGCACTTGTGTAGGTTCCATGATTACCATCAGCTGGTAGCCTTTCTAAAAGATGCTGATACATTTTCTGTGAGCAAGAGAAATCCACCTTTTGATACGGGGTTGGAGTTAAGAAAATGTGGGGTCTATTTAATCTTTGAAGGAGATGATGATTATGATGGAGGGGAAGAATCATTGGACACGGGCCTACAATCTGTCTCAGAAAAATTGGCCAATTTTTTCAGCACTCGTGAAGGTGGTGATCAGGTGAGTGTCAATGGAATTGGACATGCTGGAACATGA 3801 0.4273 MSPERDVILATPGAFRLRWDVFLSFRGTDTRGTITKGLYKSLQTRGVRVFLDDEGLERGEAVANGLMKGIDDSAAFIVILSENYASSHWCLEELTKICDTGRLLLPVFYRVDPSQVRHVSGPFGSGFESHEKRFEKNTVSKWKEALKKVGGIAGWVFNHSEENDLIQRLVRRVLKELSNTPMGVPEFAVGLDERVEKVMEVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISDVRQVSSKHDGLVSLQSKIIKDLFPGAGSPSIGDVNVGISAIKGRVSENRVLLVLDDVDEVKQIDALIGKREWFYDGSCVIITTRDTKVLTQNHVTVSYEVRELYASEARELFSYHALRRSAPPENLLSLSEEIIFLTGKMPLALEVFGSFLFGKRREEEWEDAVKKLRLIRPHDLQDVLKISYDGLDEEEKCIFLDIACLFVQKKMKRDGVIDVLRGCGFRGEIAITGTRCVQGIVLDFEEERFYKGKFGSVFPKKFQWRPSLRNISCYIKQCLKNHPEPQAEENTEFVLHTKSFEPMVNLRQLQINNLKLQGKFLPSELKWLQWQGCPLERMPLKSWPGELAVLDLKNSKKMETLWGWNGHNKVPQKLMVLNLSNCIQLTAIPDLSGCQCLEKIDLENCINLTKIHESIGKLPQSIFRLTKLEQLVLKRCQYLRRLPNSLGHLCSLQELSLYHSGLEELPESVGSLTNLETLNLMGCESLTVIPYSVGNLMSLTELLVDRTKIKELPTTVGSLSYLRKLSVVNCKLLTQLPNSVKTLASVVELQLDGTAITNLPAEIGEMKLLRILQLMNCKNLEYLPESIGHLASLTTLNTDNGNIKELPESTGRLENLVNLRLNKCRMLRKLPTSIGNLKSLYHIFMEETSLSSLPESFGMLSSLRTLKMAKRPELDTNESSFLAEPEENHSPFVLTSSFCNLTLLTELDARAWKISGKIPDEFEKLSLLETLKLDRNDFHSLPSSLKGLSILEVLSLSNCTQLNSLPSLPSKLIKLNVQNCSSLETIHDMSNLESLQELNLTNCVKLGDIPGLESLKSLRRLYMSGCIACSSQIQKRLSKVALRNLQNLSMPGSKLPEWFTGQTVSFSKRKNLELKSVLVGVIISINHSIDIPNMKRDDMPGLIDVEANVLKGGRTLFRTVLNICGVPRTDEEHMHLCRFHDYHQLVAFLKDADTFSVSKRNPPFDTGLELRKCGVYLIFEGDDDYDGGEESLDTGLQSVSEKLANFFSTREGGDQVSVNGIGHAGT 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02488 1266 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 155 IPR035897 -
Vian1g02488 1266 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 732 IPR044974 GO:0006952
Vian1g02488 1266 Gene3D - 348 432 IPR042197 -
Vian1g02488 1266 ProSiteProfiles Leucine-rich repeat profile. 1034 1056 IPR001611 GO:0005515
Vian1g02488 1266 ProSiteProfiles TIR domain profile. 17 177 IPR000157 GO:0007165
Vian1g02488 1266 SMART LRR_CC_2 806 833 IPR006553 -
Vian1g02488 1266 SMART LRR_CC_2 634 668 IPR006553 -
Vian1g02488 1266 SMART LRR_CC_2 712 739 IPR006553 -
Vian1g02488 1266 SMART LRR_CC_2 1032 1061 IPR006553 -
Vian1g02488 1266 SMART LRR_CC_2 759 786 IPR006553 -
Vian1g02488 1266 Gene3D - 174 343 IPR027417 -
Vian1g02488 1266 Gene3D Ribonuclease Inhibitor 493 656 IPR032675 -
Vian1g02488 1266 Gene3D Ribonuclease Inhibitor 657 838 IPR032675 -
Vian1g02488 1266 Gene3D Ribonuclease Inhibitor 839 1052 IPR032675 -
Vian1g02488 1266 PRINTS Disease resistance protein signature 289 303 - -
Vian1g02488 1266 PRINTS Disease resistance protein signature 382 396 - -
Vian1g02488 1266 PRINTS Disease resistance protein signature 710 726 - -
Vian1g02488 1266 PRINTS Disease resistance protein signature 211 226 - -
Vian1g02488 1266 SUPERFAMILY L domain-like 936 1112 - -
Vian1g02488 1266 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 179 - -
Vian1g02488 1266 SUPERFAMILY L domain-like 538 908 - -
Vian1g02488 1266 Gene3D - 16 173 IPR035897 -
Vian1g02488 1266 SMART till_3 18 152 IPR000157 GO:0007165
Vian1g02488 1266 Pfam NB-ARC domain 193 413 IPR002182 GO:0043531
Vian1g02488 1266 Pfam TIR domain 19 181 IPR000157 GO:0007165
Vian1g02488 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Vian1g02488 1266 SMART LRR_typ_2 830 853 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 689 712 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 988 1015 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 736 759 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 877 899 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 783 806 IPR003591 -
Vian1g02488 1266 SMART LRR_typ_2 965 987 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02488 Vian-Chr1 34878824 34884817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02488 76 872 WRKY Transcription Factor Family AT4G12020 27.305 1.64e-64 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02488 - - gmx:100786934 1755.34