Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02487 ATGTCGCCGGAAAGAGACGTCATATCGGCGACGCCGGGAGCGTTTCGGCTGCGGTGGGACGTGTTCCTGAGCTTCAGAGGCACCGACACGCGCGGTACTATCACGAAAGGTCTGTACAAGAGTCTGCAGGCGCGTGGGATTCGCGTGTTCCTGGACGACGAGGGGTTGGAGCGTGGGGAAGCGGTAGCGAATGGGCTGATGGAGGGAATTGATGACTCTGCAGCGTTCATCGTCATCATATCTGAAAACTACGCTTCTTCACACTGGTGTCTTGAGGAACTCGCCAAGATTTGCGACACCGGTAGACTCCTCTTGCCCGTTTTCTACCGGGTTGACCCGTCTCAGGTCCGACACGTATCGGGTCCCTTCGGATCGGGTTTCGAATCGCATGAAAAAAGGTTTGAGAAAAATACGGTTTCAAAATGGAAGGAAGCGTTGAAGAAAGTTGGTGGAGTTGCTGGTTGGGTTTTTAATCACAGTGAGGAAGATGATCTGATTCAGCGTTTGGTGCGAAGGGTGTTGAAAGAGTTGAGTAACACTCCTATGGGTGTGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGGAAGTTTTGCAAGTTCAATCCAATGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCCCTTTTCAATGCCCTTGTTAACCGTTTTGAGCATCGTTGCTTCATTTCCGACGTGAGACAAGTTTCATCAAAACACGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTTTTTCCTGGAGCAGGGTCTCCCTCCATCGGTGATGTCAATGTTGGTATTTCTGCTATCAAAGGGAGAGTTAGTGAGAATCGAGTTTTACTAGTCTTGGATGATGTCGATGAAGTGAAGCAGCTGGATGCTTTGATTGGTAAGAGGGAATGGTTTTACGATGGAAGCTGTGTGGTAATCACAACACGGGATACAAAAGTTCTAACTCAGAATCATGTAACTGTGTCGTATGAAGTTAGAGAGTTGTATGCTTCTGAAGCTCGAGAGTTATTCAGTTATCATGCACTGAGAAGAAGTGCACCACCAGAAAATCTTCTGAGTCTATCAGAGGAGATAATATCCCTGACGGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGTAAGAGGAAGGAGGAGGAATGGGAGGATGCTGTAAAGAAGCTAAGGCTAATTCGCCCTCACCATCTTCAGGATGTGTTCAAGATAAGTTACGATGCTTTAGATGAAGACGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTAAAAATGGAAATGAAGCGTGATGGTGTGATTGATGTGTTAAGAGGTTGCGGTTTTAGGGGTGAGATTGCTATCACGGGAACTAGATGCGTTCAAGGGATTGTACTTGATTTTGAGGAAGAAAGGTTTTATAAGGGAAAGGTCGGATCAGTTTTTCCCAAGAAGTTTCAATGCAGACCAAGTTTAAGAAAAATATCATGTTACATCAAACAATGCCTTAATAAGAATCATCCTGAACCTCAAGCAGAGGAAAGCACAGAGTTTGTACTTCACACGAAATCCTTTGAACCAATGGTTAATCTGAGACAGCTTCAGATCAACAATCTGAAATTACAGGGCAAGTTTCTTCCATCTGAACTGAAGTGGCTACAATGGCAAGGCTGCCCTTTAGAACGCATGCCTTTGAAATCTTGGCCAGGAGAACTGGCTGTCCTTGATCTCCAAAACAGCAAGAAAATGAAAACCTTGTGGGGATGGAATGGTTACAACAAGGTGCCACAGAAGTTAATGGTCTTGAACCTCTCCAACTGCGACCAACTCACTGCTATACCTGATTTATCTGGGTGTCAATGTCTAGAGAAGATTGATTTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCTGTTTGAGTACCTTGCGTAGTTTAAATTTAACGCGTTGTTCAAGCCTTATCAACCTTCCCATTGATGTCTCGGGGCTAAAACAACTAGAGAGTCTTTTTCTTTCTGGCTGCTCCAAGTTAAAATCATTGCCAGAAAATATTGGAATCCTGAAATCCTTGAAAGCACTTCATGCTAATGACACTGCAATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCACGAAGCTTGAGCAGCTTGTTTTAGAACGTTGCCAATATTTGAGAAGGCTACCTAATTCTCTAGGACACCTATGTTCTTTGCAAGTATTATCTCTATATCACTCTGGGTTGGAAGAATTACCTGAGTCTGTGGGATCGTTAAATAACCTGGAGACACTCAATTTGATGGGGTGTGAATCTCTCACTGTTATTCCTGATTCTGTAGGGAATCTCATGTCATTGACAGAACTTCTGGTTGATAGAACTGCAATTAAGGAACTCCCTACAACTGTTGGTTCTTTATCTTACCTGAGGGAATTATCAGTTGGAAACTGTAAACTTCTCACCCAATTGCCAAATTCAGTTAAAACGTTGGCCTCAGTTGTGGAACTTCAGTTAGATGGAACAGCCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAGCTACTGAGGGTACTTAAGTTGATGAATTGTAAAAATCTTGAATACTTACCGGAATCTATTGGCCACCTAGCATCTCTTACTACATTGAACACGGTCAATGGTAATATCAAAGAATTGCCAGAGTCCATTGGACGGCTGGAAAATCTTGTCAACTTAAGATTGAACAAATGCAGAATGCTCAGAAAGCTTCCAGCTTCTATAGGAGATTTGAAATCTCTATATCACATTTTCATGGAGGAAACATCTGTGTCAAGCTTACCTGAAAGCTTTGGGATGCTGTCAAGCTTGAGAACATTGAAAATGGCAAAGAGGCCTGAATTAGATACCAATGAAAGTAGCTTCCTTGCAGAACCTGAAGAAAACCATAGCCCTTTTGTACTAACATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCCCGTGCATGGAAAATATCTGGGAAAATTCCTGATGAATTTGAGAAGTTGTCACTATTGGAGACTTTGAAATTAGACAGTAATGATTTTCACAGCCTGCCTTCCAGTTTGAAGGGCCTTTCTATCCTCAAGGTCCTTTCACTGTCAAACTGCACTCAGCTGAACTCTCTCCCCTCACTTCCTTCAAACCTGATTAAGCTGAATGTTCAAAACTGTTCTTCATTAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAATCTCACAAACTGTGTAAAAGTGGGGGATATTCCGGGTCTTGAAAGCTTGAAGTCCTTGAGAAGGTTGTACATGAGTGGTTGCATTGCATGCTCCTCACAAATACAAAAGAGACTTTCGAAGGTTGCACTGAGGAATTTACAGAACTTAAGCATGCCTGGAAGCAAATTACCTGAATGGTTTTCTGGGCAAACTGTGAGCTTTTCCAAGCGTAAAAATCTTGAGCTAAAGAGTGTACTTGTTGGTGTTATTATTTCAATCAACCACAGCATTGACATACCCAACATGAAGAGAGATGATATGCCAGGCTTGATTGATGTTGAAGCAAATGTTCTCAAAGGGGGAAGAACTCTGTTTAGGACTGTGTTAAACATCTGTGGGGTGCCTAGAACAGATGAAGAACACATGCACTTGTGTAGGTTCCATGATTACCATCAGCTGGTAGCCTTTCTAAAAGATGCTGATACATTTTCTGTGAGCAAGAGCAATCCACCTTTTGATACGGGGTTGGAGTTAAGAAAATGTGGAGTCTATTTAATCTTTGAAGGAGATGATGATTATGATGGAGGGGAAGAATCATTGGACACAGGCCTACAATCTGTCTCAGAAAAATTGGCCAAATTTTTCAGCACTCGTGAAGGTGGTGATCAGGTGAGTGTCAATGGAATTGGACATGCTGGAACATGA 3996 0.4287 MSPERDVISATPGAFRLRWDVFLSFRGTDTRGTITKGLYKSLQARGIRVFLDDEGLERGEAVANGLMEGIDDSAAFIVIISENYASSHWCLEELAKICDTGRLLLPVFYRVDPSQVRHVSGPFGSGFESHEKRFEKNTVSKWKEALKKVGGVAGWVFNHSEEDDLIQRLVRRVLKELSNTPMGVPEFAVGLDERVEKVMEVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISDVRQVSSKHDGLVSLQSKIIKDLFPGAGSPSIGDVNVGISAIKGRVSENRVLLVLDDVDEVKQLDALIGKREWFYDGSCVVITTRDTKVLTQNHVTVSYEVRELYASEARELFSYHALRRSAPPENLLSLSEEIISLTGRMPLALEVFGSFLFGKRKEEEWEDAVKKLRLIRPHHLQDVFKISYDALDEDEKCIFLDIACLFVKMEMKRDGVIDVLRGCGFRGEIAITGTRCVQGIVLDFEEERFYKGKVGSVFPKKFQCRPSLRKISCYIKQCLNKNHPEPQAEESTEFVLHTKSFEPMVNLRQLQINNLKLQGKFLPSELKWLQWQGCPLERMPLKSWPGELAVLDLQNSKKMKTLWGWNGYNKVPQKLMVLNLSNCDQLTAIPDLSGCQCLEKIDLENCINLTKIHESIGCLSTLRSLNLTRCSSLINLPIDVSGLKQLESLFLSGCSKLKSLPENIGILKSLKALHANDTAIAELPQSIFRLTKLEQLVLERCQYLRRLPNSLGHLCSLQVLSLYHSGLEELPESVGSLNNLETLNLMGCESLTVIPDSVGNLMSLTELLVDRTAIKELPTTVGSLSYLRELSVGNCKLLTQLPNSVKTLASVVELQLDGTAITNLPDEIGEMKLLRVLKLMNCKNLEYLPESIGHLASLTTLNTVNGNIKELPESIGRLENLVNLRLNKCRMLRKLPASIGDLKSLYHIFMEETSVSSLPESFGMLSSLRTLKMAKRPELDTNESSFLAEPEENHSPFVLTSSFCNLTLLTELDARAWKISGKIPDEFEKLSLLETLKLDSNDFHSLPSSLKGLSILKVLSLSNCTQLNSLPSLPSNLIKLNVQNCSSLETIHDMSNLESLQELNLTNCVKVGDIPGLESLKSLRRLYMSGCIACSSQIQKRLSKVALRNLQNLSMPGSKLPEWFSGQTVSFSKRKNLELKSVLVGVIISINHSIDIPNMKRDDMPGLIDVEANVLKGGRTLFRTVLNICGVPRTDEEHMHLCRFHDYHQLVAFLKDADTFSVSKSNPPFDTGLELRKCGVYLIFEGDDDYDGGEESLDTGLQSVSEKLAKFFSTREGGDQVSVNGIGHAGT 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02487 1331 SMART LRR_typ_2 1053 1080 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 1030 1052 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 848 871 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 801 824 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 707 730 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 895 918 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 683 705 IPR003591 -
Vian1g02487 1331 SMART LRR_typ_2 754 777 IPR003591 -
Vian1g02487 1331 SMART LRR_CC_2 824 851 IPR006553 -
Vian1g02487 1331 SMART LRR_CC_2 1097 1126 IPR006553 -
Vian1g02487 1331 SMART LRR_CC_2 635 662 IPR006553 -
Vian1g02487 1331 SMART LRR_CC_2 777 804 IPR006553 -
Vian1g02487 1331 PRINTS Disease resistance protein signature 382 396 - -
Vian1g02487 1331 PRINTS Disease resistance protein signature 775 791 - -
Vian1g02487 1331 PRINTS Disease resistance protein signature 289 303 - -
Vian1g02487 1331 PRINTS Disease resistance protein signature 211 226 - -
Vian1g02487 1331 ProSiteProfiles TIR domain profile. 17 177 IPR000157 GO:0007165
Vian1g02487 1331 Gene3D - 168 343 IPR027417 -
Vian1g02487 1331 SUPERFAMILY L domain-like 540 865 - -
Vian1g02487 1331 Pfam TIR domain 19 181 IPR000157 GO:0007165
Vian1g02487 1331 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 179 - -
Vian1g02487 1331 SMART till_3 18 152 IPR000157 GO:0007165
Vian1g02487 1331 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 155 IPR035897 -
Vian1g02487 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Vian1g02487 1331 Gene3D - 348 432 IPR042197 -
Vian1g02487 1331 Pfam NB-ARC domain 193 413 IPR002182 GO:0043531
Vian1g02487 1331 SUPERFAMILY L domain-like 838 1165 - -
Vian1g02487 1331 Gene3D Ribonuclease Inhibitor 904 1118 IPR032675 -
Vian1g02487 1331 Gene3D Ribonuclease Inhibitor 713 903 IPR032675 -
Vian1g02487 1331 Gene3D Ribonuclease Inhibitor 530 712 IPR032675 -
Vian1g02487 1331 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 750 IPR044974 GO:0006952
Vian1g02487 1331 Gene3D - 5 150 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02487 Vian-Chr1 34863934 34869782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02487 731 924 WRKY Transcription Factor Family AT4G12020 33.333 2.75e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02487 - - lang:109340539 1744.94