Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02486 ATGCCGTCTCACGCGGATCTGGAGCGTCAGATCGAGCAGCTAATGGAGTGCAAGCCTCTGACGGAGTCGGAGGTGAAGACGCTGTGCGATCAAGCGAGGGCGATTCTGGTGGAGGAGTGGAACGTGCAACCGGTGAAGTGCCCCGTCACCGTCTGCGGCGATATTCACGGTCAGTTCTACGATCTCATCGAGTTGTTTCGGATTGGAGGGAGCACACCCGATACCAATTATCTCTTCATGGGTGATTATGTAGCTGAGAAGTGGGCTTTGTGGGTCTCAAGATATCGTGGGTACTATTCAGTGGAGACTGTTTCTCTTTTGGTGGCTTTGAAAGTTCGTTATCGGGATAGAATTACAATTCTCAGGGGAAATCATGAAAGCCGTCAAATTACTCAAGTGTATGGGTTCTATGATGAATGCTTGAGAAAATACGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGGTTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAACATCAGGGCATTGGATCGTATACAAGAGGTTCCACATGAAGGACCAATGTGTGATCTATTGTGGTCTGACCCTGACGATCGCTGTGGATGGGGAATATCTCCCCGTGGGGCAGGATACACATTTGGACAGGATATTGCTACTCAGTTTAATCATACCAATGGTCTCTCCCTGATATCTAGAGCTCATCAGCTTGTTATGGAAGGATACAATTGGTGCCAGGACAAGAATGTGGTTACCGTATTTAGCGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTAGAAATAGGAGAGAATATGGATCAGAGTTTTCTTCAGTTTGATCCAGCTCCCAGGCAAATTGAGCCTGACACCACACGCAAGACTCCAGATTATTTTTTGTAA 951 0.4637 MPSHADLERQIEQLMECKPLTESEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGSTPDTNYLFMGDYVAEKWALWVSRYRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIATQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQSFLQFDPAPRQIEPDTTRKTPDYFL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02486 316 Pfam Calcineurin-like phosphoesterase 48 249 IPR004843 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 262 278 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 155 181 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 87 114 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 120 144 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 184 211 IPR006186 GO:0016787
Vian1g02486 316 PRINTS Serine/threonine phosphatase family signature 240 260 IPR006186 GO:0016787
Vian1g02486 316 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 316 IPR047129 GO:0004722
Vian1g02486 316 CDD MPP_PP2A_PP4_PP6 6 300 - -
Vian1g02486 316 SMART pp2a_7 20 300 IPR006186 GO:0016787
Vian1g02486 316 Gene3D - 2 316 IPR029052 -
Vian1g02486 316 FunFam Serine/threonine-protein phosphatase 1 316 - -
Vian1g02486 316 ProSitePatterns Serine/threonine specific protein phosphatases signature. 121 126 IPR006186 GO:0016787
Vian1g02486 316 SUPERFAMILY Metallo-dependent phosphatases 6 303 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02486 Vian-Chr1 34728836 34734587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02486 49 235 Calmodulin-binding Proteins AT5G63870 34.821 3.03e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02486 K04382 - gmx:100783950 622.083