Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02484 ATGAACCAAACCAAATCCAAAATGTGTACGGCGGAGAAAGACGGGATCATGCTCTTCGGCGTGCGCCTCACCCTACCCGATAACAACCCCACCGTTTTCAGAAAGAGTGCCAGCATGAACAATCTCTCCCCAAACTCTGAATCGCCTCCGCCGCACCATCCCAATGCAGGCTACGCCTCAGAAGACGTCGTTCACCTCTGCCGTCGCACACGCAAGCGAGGGATTCCGTGGACGGAGGAGGAGCACAGGCAGTTCCTGTTGGGATTACAGAACGTTGGGAAAGGAGATTGGAGAGGAATTTCTAGAAACTTCGTCAAGACTCGAACGCCCACTCAGGTCGCTAGTCACGCTCAAAAGTATTTTCTCCGCCGTCACACTCACAATCGCCGCCGCCGGAGATCTAGTCTCTTCGATATCACCACCGACTCGGTGAAGGAAGAGGAACGAGCGGTGCCGTCAGCTAGGTCGAAACCGGTTTTGCCGGCACTTCCGTCTTTGAAAATGGCTGAGCTGGACTTGAATGGGAGGTCGCTCTCGCTGAAGCTGAGGTTGCCGGAGTCGGAGGAACCGTCGCCGGTGACTTTTGAGCTTGTCTAG 597 0.5511 MNQTKSKMCTAEKDGIMLFGVRLTLPDNNPTVFRKSASMNNLSPNSESPPPHHPNAGYASEDVVHLCRRTRKRGIPWTEEEHRQFLLGLQNVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHTHNRRRRRSSLFDITTDSVKEEERAVPSARSKPVLPALPSLKMAELDLNGRSLSLKLRLPESEEPSPVTFELV 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02484 198 PANTHER TRANSCRIPTION FACTOR KUA1 2 149 - -
Vian1g02484 198 FunFam transcription factor MYB1R1 75 126 - -
Vian1g02484 198 SMART sant 73 123 IPR001005 -
Vian1g02484 198 CDD SANT 76 121 IPR001005 -
Vian1g02484 198 NCBIfam myb-like DNA-binding domain, SHAQKYF class 72 123 IPR006447 GO:0003677
Vian1g02484 198 ProSiteProfiles Myb-like domain profile. 69 121 IPR001005 -
Vian1g02484 198 Gene3D - 75 126 - -
Vian1g02484 198 SUPERFAMILY Homeodomain-like 70 124 IPR009057 -
Vian1g02484 198 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Vian1g02484 198 ProSiteProfiles SANT domain profile. 77 125 IPR017884 -
Vian1g02484 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 125 IPR017930 -
Vian1g02484 198 MobiDBLite consensus disorder prediction 32 58 - -
Vian1g02484 198 MobiDBLite consensus disorder prediction 32 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02484 Vian-Chr1 34703025 34703797 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian1g02484 Myb_DNA-binding 3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02484 - - gmx:778091 263.848