Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02480 ATGAAGAGGTCAAGGGATGATGCTTATATGAGTCCACAACATAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACTGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTACCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAGTTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTATGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACGCATTTTCTTCCTGATACTTCAGGAACAGCCTTTAATCACTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACACTGAGGCAAATGCATGTTGAAAAGAGAGAGAGGAACATTGGTTCACAAGGTGATCATGACTTCTGTGCTGATCATCTTGATCCAGAACATGACAGAGGTTTAATCAAGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGAGAAAGACAGGAGACAGCGGGAAAGGGATGACAGAGATTATGATCATGATGGTAGTAGGGAAAATTTATCTTACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGCATTGAACTGATGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGACGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACAAAGTCCCGAGGATTACCAGGAATTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGGGCAATTTGCTGGGAAATCATGCAGACCTTATGGAGGGATTTGATGAATTTTTGACTCAATGTGAAAAGAATGAAGGATTCCTTGCTAGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACATGGACCGAAACCAATGAAGGTAGAGGATAAGGACCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTCGAGAAAGGGACAAATCCAATGCAACTGCTAACAAGGATGGTTCTGCTCCTAAGATGTCTTTATATGCCAGCAAAGATAAGTATTCAGGAAAGCCTATAAGTGAACTGGATCTTTCCAACTGTGAACAATGCACTCCTAGTTATCGCCTTCTTCCTAAAAATTACCTAATACCGCCAGCCAGCCAGAGAACAGAGCTTGGTGCAGAGGTGTTGAATGATTACTGGGTGTCTGTTACTTCCGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGCGTTGAGGAACTTTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGATGCATAGAAAGACTATATGGTGATCACGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACTAAAAGCTTGAGCACTAAAGTCTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAAAGAAAAGAGGACGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGCATATCCTGATCCAGAGATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTAGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCGTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGGAATAAGTCTGCCAAAAGTAGCACTGAAGTTGTTGCCGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTCCATTTGAGCAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATGCTAAGGGTAAAAAGGATAATCATCTTGATTCGGACAGCTTTGCACAAAAAACTGAAGCCTTAGGGAGTAATATGCAGCAGGGTAAAATGAATATAAATGCATCTATACCTGATGAAATATCAAGAGCCAATAAGCAAGATCATTCCACTGAACGGTTGGTGAATGCTGATGTCTCACTATCCTCGGGTGGGGAACAAAATAATAGAAGTACAAATGTGGATAACGCAACAGGACTTGCTGCTACTCCATCAAGACCTGGTAATATATCTTCCGTAGGAGTTGGTTTAGCTTCATTAGAGGGTGCTGACTCTGCACGACCAGTTACATCAACAAATGTGGCCATCATTGAGGAATCTAAAGTTCACAGACATCAGGAAGAATCTGTGGGACACTTCAGATGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGACAATTTTGCAGTTTATGGACATACTAGTTCGGAGGCAGTTCATAAAGGAAACGATAGTAACATTTCCCAACCATACCAAAACAGACATGGGGAAGTAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTAGAGGATAGTGAAAATGCTTCAGAAAATGGAGATATTTCTGGCACAGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACATGAGGAGGACGGCGGTCATGATCATGATGACAAGGCTGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGGGATTGTGCCTCATTGCCATATTCAGAACGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACGTTGCATGAGAAAGAAAGGATTGGTCGAGTCTTTTATGGAAATGATTCCTTTTATGTCCTATTTAGACTCCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTTCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAACGCCCTCTACAATTTACTAGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAGCAAGCTGCTTCAATTATATGCATACGAAAAATCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTTCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCTGAAGTGACTACTGTATCAATGGACCCTAATTTTTCGGCCTATCTGCACAATGACTTCCTATCTATTGTCCCAGACAAAAAGGAGAAGTCTGGAATTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTGGTGATGAATTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGACACTGAAGACCTTTTATATCAAACAAGAAAAAAAAGGAGGTCCTTGCATCAGAGCAGTTCATGCCTTGAACAATCAAAGTCCTCAATTTCTTCAAGCAGAGAACAACGAGTTTGCAAATTATTTTCAAATTGA 4233 0.4023 MKRSRDDAYMSPQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTAFNHYASTRNPLLRDRSSAMPTLRQMHVEKRERNIGSQGDHDFCADHLDPEHDRGLIKADKDQRRRGEKEKESREEKDRRQRERDDRDYDHDGSRENLSYKRKSACRAEDSGIELMHDTDENFGMHPVSYACDDKSSLKSMYSPVIGYLDKVKEKLQSPEDYQEFLKCLNIYCKEIIARHELQSLVGNLLGNHADLMEGFDEFLTQCEKNEGFLASLLKKKSFWHEGHGPKPMKVEDKDRDRDDGMKERDRRERDKSNATANKDGSAPKMSLYASKDKYSGKPISELDLSNCEQCTPSYRLLPKNYLIPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFAYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNKSAKSSTEVVAGDGSPVMNPKNLNINRNGDENFPFEQSHSCKQWQPSGHAKGKKDNHLDSDSFAQKTEALGSNMQQGKMNINASIPDEISRANKQDHSTERLVNADVSLSSGGEQNNRSTNVDNATGLAATPSRPGNISSVGVGLASLEGADSARPVTSTNVAIIEESKVHRHQEESVGHFRCEREEGELSPNGDFEEDNFAVYGHTSSEAVHKGNDSNISQPYQNRHGEVVRGEAGGENDADDEGEESPHRSLEDSENASENGDISGTESADGEECSREHEEDGGHDHDDKAESEGEAEGMADANDVEGDCASLPYSERFLVNVKPLAKYVPPTLHEKERIGRVFYGNDSFYVLFRLHQTLYERIRSAKVNSSSSERKWRASNDTDSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSPSPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSIVPDKKEKSGIYLKRNKRKNGSGDEFSSQTMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQTRKKRRSLHQSSSCLEQSKSSISSSREQRVCKLFSN 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02480 1410 Coils Coil 556 576 - -
Vian1g02480 1410 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 886 917 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 424 468 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 946 980 - -
Vian1g02480 1410 SMART hdac_interact2seq4b 487 587 IPR013194 -
Vian1g02480 1410 FunFam Paired amphipathic helix protein SIN3 332 405 - -
Vian1g02480 1410 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Vian1g02480 1410 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Vian1g02480 1410 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 946 970 - -
Vian1g02480 1410 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 770 784 - -
Vian1g02480 1410 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 1014 1083 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 762 839 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 1 38 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 1014 1039 - -
Vian1g02480 1410 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 228 299 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 23 38 - -
Vian1g02480 1410 MobiDBLite consensus disorder prediction 1052 1079 - -
Vian1g02480 1410 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Vian1g02480 1410 Pfam Sin3 family co-repressor 489 580 IPR013194 -
Vian1g02480 1410 PANTHER SIN3B-RELATED 38 1270 IPR039774 GO:0003714
Vian1g02480 1410 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 799 825 - -
Vian1g02480 1410 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Vian1g02480 1410 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Vian1g02480 1410 Pfam C-terminal domain of Sin3a protein 1126 1372 IPR031693 -
Vian1g02480 1410 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Vian1g02480 1410 MobiDBLite consensus disorder prediction 424 456 - -
Vian1g02480 1410 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Vian1g02480 1410 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02480 Vian-Chr1 34542893 34552811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02480 28 119 WRKY Transcription Factor Family AT4G12020 60.638 6.54e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g02480 Sin3a_C 7.1e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02480 K11644 - gmx:100781798 2258.41