Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02477 ATGTCTTTCATTATCATGCTCCGATCCTCGCCCTTCCTCGCCCTTCTTTTTCTTTTACTTCTTCTTCACAGTTTCTCAATACCAACATGTCATTGCCAAACCACCACTTCTCCCCCTCAGAACATCGAAACTTTCTATCCAAATCAAACTTCAGCACCACAAAAACCTGAGACATCACCACCAGCTGCTGACACACCACCTGGCCGTGGTTCTTCCAGTGGTAAGATAGCCAAGGCGGTGGCTGCAACTGCAGCCAGCACCGTAGTTTTTTGTGGTTTAATTTTCTTTCTGGTGCAGAGGTTCTTGAGGGCCCGAAAAAGAAAGAGAGAGGTGATAAGTAACACTGCTTCTGGTGGAGATAACCGTGTTGTGCCTCAGGGAAATGTGTTTGAGAGAATTGATGGAAATGTGAAGGGCTTGATTGTGGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTGAAGGAAAGAACTCTGACAAGGATCTATATAAGGAGGTTTTGAGTAGTCCCAGAAACAAAGAAAAAGAAGATGGTGATGATGAAAATCAAGCCAATAAGTCCAAGTCCATCCAAGAAGTTCCTCTCCTTAGAGGGAAATCTTCGACTTCCCACTTGAATGTATCTCCAGAAGAGGATGAACCATACAGATTTTCCCCACTTCCTTCTCCTCCTGCTTCTTATGCTTCTGTTTCTGTTTCTGCTCCCACTCCTTCAACTCTTCCTTCATCAGCTGGGGTTGTTATCAAGGGTGCTCAGAAACCAGACTCTCCAACTCAACCCTCAACTCCACCCCCTCCCGTTTCACCATCAACACCTTCATCCTCTACTTCTGTTTCAGCAGTTCCGAAAGCAAATAATCCTGCGCCGGCACCTCCCCCTCCCCCAATCCCAGCCCGAAGGAGTCCACCACCACCTCCTCCTCCAGCCTCATCAAAAGCACCACCTGCTCCCATTCAAATTCCACATATTAAGCAAGGAAACTCTTCAGGAAAAGGCATCCCAGAAACCAGCAATGACCAAGTGAAGCTGAAGCCTCTGCATTGGGATAAGGTCAATACTAATAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCCACCAACAGGAAATCTCCCAAAGGAAAAAGTCACTCAGCCATTCCAAGGAACGATGCCTCAGCTTCATCTGCAAAAGTTTTCCTTCTTGACCCGAGAAAATCACAGAACATTGCTATTGTTCTCAAATCTCTTGCAGTCTCACTAGGTGAAATTGTTGATGCACTCACTGATGGTATGGGCCTCAAACCAGATACTCTTGAAAAGCTTGCTAGAGTTTCCCTAACAGAAGAAGAGCAATCTCTCATCCTTGAATACAAAGGAGACCCGGCAAGACTTGCAGCAGCTGAATCTTTCCTTTATAATCTCCTCAAAGCTGTTCCCTCAGCTTTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCGGAGATTCAAGAAACCAAGGAATCTCTGCAGATCATTGAACTGGGTTGTAAGGAGCTTAAAAGCAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTAAAGGCAGGAAACAGAATGAATGCAGGAACTGCGAGGGGCAATGCACAAGCTTTCAATTTGGCTTCTCTGAGAAAACTCTCTGATGTTAAGAGCAGCGATGGAAAAACCACATTACTTCACTTTGTGGTTGAAGAGGTAGTCCGTTCTGAGGGAAAAAGGGTTGCTCTTAACCGCAATGGCAGCCTGAGAAGTAGCAGCAGTAGGAGCAGCAGCAGTAGCAATGGAAACTATGAGAACAATGTTGCTTCAAATGAACTGATAGAAAGGGAATATACGACACTAGGATTGCCAATTGTGGGAGGGATCAGTTCTGAGTTATCCAATGTTAAGAAAGCAGCACAAATAGATTATAACAATTTAGTTAATTCAATCTCGGCCCTCTCAACCCGGTTAGTCAAAGTTCAAGAACTGGTTTCCTTGTGTGGAAATAACGAAGAAGGACATTTTGTAAAAGAAATGGATCATTTTCTTAGAAATGCTGAGGAAGAGCTGAAATTATTAAGGGAGAAGCAAACAAGTGTATTGCAGCTCATCAAGAAAACAACACAGTACTATCAAGGAGGAGCTTCAAAAGAAACTGCAGAAGACAATCTTCATTTGTTTGTCATAGTGAAGGATTTTCTGGGAATGGTTGATCAAGTATGCATTGAGATTGCACGTGATATGCAGAAGAGAAGATTTCCTCCTAAGGCCATTTTTGGGTAG 2337 0.4399 MSFIIMLRSSPFLALLFLLLLLHSFSIPTCHCQTTTSPPQNIETFYPNQTSAPQKPETSPPAADTPPGRGSSSGKIAKAVAATAASTVVFCGLIFFLVQRFLRARKRKREVISNTASGGDNRVVPQGNVFERIDGNVKGLIVDEDGLDVIYWRKLEGKNSDKDLYKEVLSSPRNKEKEDGDDENQANKSKSIQEVPLLRGKSSTSHLNVSPEEDEPYRFSPLPSPPASYASVSVSAPTPSTLPSSAGVVIKGAQKPDSPTQPSTPPPPVSPSTPSSSTSVSAVPKANNPAPAPPPPPIPARRSPPPPPPPASSKAPPAPIQIPHIKQGNSSGKGIPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRKSPKGKSHSAIPRNDASASSAKVFLLDPRKSQNIAIVLKSLAVSLGEIVDALTDGMGLKPDTLEKLARVSLTEEEQSLILEYKGDPARLAAAESFLYNLLKAVPSAFKRLNAMLFRLNYDSEIQETKESLQIIELGCKELKSKGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSSDGKTTLLHFVVEEVVRSEGKRVALNRNGSLRSSSSRSSSSSNGNYENNVASNELIEREYTTLGLPIVGGISSELSNVKKAAQIDYNNLVNSISALSTRLVKVQELVSLCGNNEEGHFVKEMDHFLRNAEEELKLLREKQTSVLQLIKKTTQYYQGGASKETAEDNLHLFVIVKDFLGMVDQVCIEIARDMQKRRFPPKAIFG 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02477 778 MobiDBLite consensus disorder prediction 226 247 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 169 340 - -
Vian1g02477 778 ProSiteProfiles Formin homology-2 (FH2) domain profile. 335 778 IPR015425 -
Vian1g02477 778 MobiDBLite consensus disorder prediction 602 622 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 324 338 - -
Vian1g02477 778 SUPERFAMILY Formin homology 2 domain (FH2 domain) 348 770 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 169 188 - -
Vian1g02477 778 Gene3D Formin, FH2 domain 355 772 IPR042201 -
Vian1g02477 778 MobiDBLite consensus disorder prediction 189 210 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 287 317 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 38 74 - -
Vian1g02477 778 SMART it6_source 335 770 IPR015425 -
Vian1g02477 778 PANTHER FORMIN-RELATED 15 766 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vian1g02477 778 MobiDBLite consensus disorder prediction 601 622 - -
Vian1g02477 778 Pfam Formin Homology 2 Domain 339 755 IPR015425 -
Vian1g02477 778 Coils Coil 694 721 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 259 273 - -
Vian1g02477 778 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02477 Vian-Chr1 34507106 34509541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02477 311 770 FH2 protein (formin) Gene Family AT1G70140 57.235 2.12e-169 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02477 - - gmx:100783219 1041.95