Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02473 ATGGACTCCAACACTATCGTTTCATGGCCAAGGATGTCAGAAAACATTGAGGGTTTTGCTCTCTCACCCAAGAAATCCGAAGAGGTTCATGTTTTAGCAGTTGATGACAGCCTCGTTGATCGCAAAGTCATCGAACGCTTGCTCAAAGTCTTAGCTTGCAAAGTTACTGCTGTGGATAGTGGGCTGAGAGCACTGCAATTGCTTGGACTATTGGACGAGCAGAAAATTCCCTCCGAAACTAATGGTTTTGTTGGTTTAAAGGTGGATCTAATTATCACAGACTACTGCATGCCTGGAATGACAGGTTATGAGTTACTGAAGAAAATCAAGGAATCGTCCACTTTCAAGGAAACTCCAGTGGTGATTATGTCCTCTGAAAACGTTTTGCCACGCATAGACAGATGTTTGGAAGAGGGTGCAGAGGATTTCATAGTTAAGCCAGTGAAGTTATCTGACGTTAAGCGTTTGAAGGATTACATGACAACAAAGGAGGCTAAGGTTGAAGGCCAAGACAGGGAAGGGATCCTCAAAAGGAAGCTCTTAGACACTTCTGAAATGTCATCATCATCACCACCGTCTATTTCCTCGTCATCTTCACCCTCAGTGATTCACTCTCCAATCAGACGGCTTAAAATGACCAGCACTGATTGA 651 0.4378 MDSNTIVSWPRMSENIEGFALSPKKSEEVHVLAVDDSLVDRKVIERLLKVLACKVTAVDSGLRALQLLGLLDEQKIPSETNGFVGLKVDLIITDYCMPGMTGYELLKKIKESSTFKETPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTKEAKVEGQDREGILKRKLLDTSEMSSSSPPSISSSSSPSVIHSPIRRLKMTSTD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02473 216 MobiDBLite consensus disorder prediction 180 216 - -
Vian1g02473 216 CDD REC_typeA_ARR 31 156 - -
Vian1g02473 216 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 187 IPR045279 GO:0009736
Vian1g02473 216 ProSiteProfiles Response regulatory domain profile. 30 161 IPR001789 GO:0000160
Vian1g02473 216 Pfam Response regulator receiver domain 31 153 IPR001789 GO:0000160
Vian1g02473 216 SUPERFAMILY CheY-like 29 156 IPR011006 -
Vian1g02473 216 Gene3D - 29 197 - -
Vian1g02473 216 SMART REC_2 29 160 IPR001789 GO:0000160
Vian1g02473 216 MobiDBLite consensus disorder prediction 182 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02473 Vian-Chr1 34435433 34436484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02473 23 207 Response Regulator Gene Family AT1G59940 64.324 2.33e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g02473 Response_reg 1.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02473 K14492 - gmx:100527828 331.643