Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02466 ATGAATGTCACTCGTTCTGCTTTGGTGGTGCTTCATCTCCAAAACCCACCAATTCGCTACCAGTTCTTCTCCCACTTCCTCAAACCAACCTTCCCTTCTGTATTCAAACCTCGTCCCTTCTCTCTAATCACTCCACGCCAAACACATGCTACACCCTTTGTTAATGCTGTTGCATCAGCTTCATCATCACAAGCTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCCTGGACTTCACTTGGTCTCTCTGATACCATTTCTAGAGCACTCTCTGATATTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGTTGTTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCAGGAACATTCTCTACATGCTATGTCTGATCAGGAAGTGACCCCGACACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAAGATGGCCAGCAGTCTACGTAGGGATGATGGTGAGGCCATAGTCAGTGTGGCTGCCATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGTATGCAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCTGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAATTTGCTCCGCTTTGATGAAAAGGTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAGCGAAAGATGAATCTTCCTTGTCATCAGAAGCTGCTTTTGAAGGTGAAGAGGAACTTCAAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAAGATGATATTGTTGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACTTATGAACGTAGTAAACAGTATGTTTTTGTTGCTGCAACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAACATATGTTTCCTGATGCTGAGTGGATTTGTGGAAACTATCTTCATTGCCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACCGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCAAATACTGTTGATGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGAATTGAATGTTCACGCTATCATAAGAATTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGTACTGATGCTGCTGCTCGAGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACCGAATCCAACAGGGAACTTGTCGATGCAGTTCGTTGGGCAGAGAAACGTGGTCAACCTGTGGAAACTGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCACAGATTCAACAACTAATAAAGAGAGGGCACTGGCATGA 1740 0.431 MNVTRSALVVLHLQNPPIRYQFFSHFLKPTFPSVFKPRPFSLITPRQTHATPFVNAVASASSSQASNGRDTFFAEENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVMSGKDVVIAAETGSGKTYSYLVPLIDKLRDAQEHSLHAMSDQEVTPTQKVLLILCPNVQLCEQVVKMASSLRRDDGEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSAKDESSLSSEAAFEGEEELQTEATLEEDDTDKEDDIVDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKHMFPDAEWICGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLVNAGGIHRTMVFANTVDAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEKRGQPVETAFSRKRSFRNKLKKRGTNKVTDSTTNKERALA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02466 579 Gene3D - 387 578 IPR027417 -
Vian1g02466 579 Coils Coil 579 579 - -
Vian1g02466 579 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 563 IPR001650 -
Vian1g02466 579 MobiDBLite consensus disorder prediction 296 311 - -
Vian1g02466 579 CDD SF2_C_DEAD 386 524 - -
Vian1g02466 579 Gene3D - 54 368 IPR027417 -
Vian1g02466 579 Pfam Helicase conserved C-terminal domain 422 515 IPR001650 -
Vian1g02466 579 MobiDBLite consensus disorder prediction 548 579 - -
Vian1g02466 579 SMART ultradead3 97 389 IPR014001 -
Vian1g02466 579 CDD DEADc 89 270 - -
Vian1g02466 579 MobiDBLite consensus disorder prediction 288 311 - -
Vian1g02466 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 527 IPR027417 -
Vian1g02466 579 SMART helicmild6 435 515 IPR001650 -
Vian1g02466 579 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Vian1g02466 579 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 88 552 - -
Vian1g02466 579 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 370 IPR014001 -
Vian1g02466 579 Pfam DEAD/DEAH box helicase 104 282 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02466 Vian-Chr1 34258903 34264728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02466 329 536 Eukaryotic Initiation Factors Gene Family AT5G11200 25.105 1.71e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02466 - - gmx:100789323 924.465