Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02460 ATGATGAAGGGGGAACCACCGGCAGCGCTCCTCATGTCGGTTTCCTGCATCTCCGACTACGACCTCCTCTGCGCCGACGAAAGCTCCGGCATCCTCTCCGGAGAGTCGCCGGAATGTTCGTCCGATGTAGACTCCACTTCCCCGCCGCCGTCGCCGCTACCTTCCTCAGAAGACTATTCAATCGCTAGTTTCATCGAACACGAGCGCAACTTTGTCCCCGGATTCGACTACCTCTCAAGGTACCAATCTCGCACCCTCGACGCCGACGCCAGAGAGGAATCCGTTGCATGGATTCTCAAGGTACAAGCGTATTATGGCTTTCAACCTCTAACGGCGTACCTTGCCGTCAACTATATGGATCGGTTTATGGATTCTCGCGATTTACCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTGCATGTTTGTCTTTGGCAGCAAAGATGGAGGAACCTCTGGTTCCATCTCTCTTGGACCTTCAGATAGAAGGTGCAAAGTACTTATTTGAGCCGAGAACAATTCGTAGGATGGAGCTACTTGTTCTGGGTGTTTTGGATTGGAGGCTAAGATCAGTAACCCCACTTTGTTTTCTCGCTTTCTTTGCGTGCAAAATAGATTCAACAGGAGCTTTTACCGGGTTCCTCATTTCCCGGGCCACAGAAATCATCGTGGCTAATATCCAAGAGGCTGGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCCGCAGCCATACTTTCCGCGGCTAAGGAAATTCCTAATTGGGCTGTCCTTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGACTAAGAAAAGAAAAAATTATTGGGTGCTACCAGTTGATGCAAGAACTTGTGGTTAACAGTAACCGCAGAAAACTCCCTTTGGTGTTGCCGCAGTTGCGAGTAACAACTCGGACTCGAATGAGAATTCCCTTGGGGAGAGGGATTTTGCATCATGTGGGAAGTAACGAGAGAAGAGGAAACACTGAAACAGTGGCGAAAGAGATGACAGATGATGGAGTCAAAGCCGCAGACGTTGAGTACTAA 1053 0.4976 MMKGEPPAALLMSVSCISDYDLLCADESSGILSGESPECSSDVDSTSPPPSPLPSSEDYSIASFIEHERNFVPGFDYLSRYQSRTLDADAREESVAWILKVQAYYGFQPLTAYLAVNYMDRFMDSRDLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQIEGAKYLFEPRTIRRMELLVLGVLDWRLRSVTPLCFLAFFACKIDSTGAFTGFLISRATEIIVANIQEAGFLAYRPSCIAAAAILSAAKEIPNWAVLKPEHAESWCEGLRKEKIIGCYQLMQELVVNSNRRKLPLVLPQLRVTTRTRMRIPLGRGILHHVGSNERRGNTETVAKEMTDDGVKAADVEY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02460 350 FunFam D2/4-type cyclin 74 191 - -
Vian1g02460 350 SUPERFAMILY Cyclin-like 60 190 IPR036915 -
Vian1g02460 350 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vian1g02460 350 CDD CYCLIN_AtCycD-like_rpt1 90 188 - -
Vian1g02460 350 SMART Cyclin_C_2 193 310 IPR004367 -
Vian1g02460 350 Pfam Cyclin, C-terminal domain 193 295 IPR004367 -
Vian1g02460 350 ProSitePatterns Cyclins signature. 91 122 IPR006671 -
Vian1g02460 350 SUPERFAMILY Cyclin-like 175 288 IPR036915 -
Vian1g02460 350 CDD CYCLIN_AtCycD-like_rpt2 193 283 - -
Vian1g02460 350 SMART cyclin_7 96 184 IPR013763 -
Vian1g02460 350 Gene3D - 63 254 - -
Vian1g02460 350 Pfam Cyclin, N-terminal domain 62 190 IPR006671 -
Vian1g02460 350 Gene3D - 74 191 - -
Vian1g02460 350 MobiDBLite consensus disorder prediction 33 55 - -
Vian1g02460 350 PANTHER CYCLINS 61 291 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02460 Vian-Chr1 34180609 34184878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02460 10 307 Core Cell Cycle Gene Families AT1G70210 63.000 1.57e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02460 K18810 - gmx:100818190 514.998