Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02450 ATGAGTTGGATTCATTCTCAAATCTGCCATAGTAGTGATGCTATCAACAACCCCACTAGTATTTCCCCATCTTCTTGTTCTTCTACTGCACCATTGTCTTACAGTTCTGAGTACAAGAAACAACTACCCCCTCCTCTATCTTCTTCATCTGGCACTAGAATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATTCCTTATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATGTCGGAATCTGATCCTTACCAGAGGCAGTTACAGCAGCTCTTCCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTGTACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAGGACATGCTGAGGTTGTTGCCCCTTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTCTCAAATTCAACCTGCCCTCTCTGCCGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGAGTTTGAGGGTCTGAGGGAGGAAGATGGGGTTTCAGGCAGTGTTGCTGCAGAGGCTGGTTCCTTCAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAGGGGGTAGAAAGAGGAGGAGGAGGGGAGAGCAGTACAAGTAACTTGGATGTTAGAAGATGCTATTCAATGGGGTCCTTCCAATATGTTGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGTCAGTGGTGGCAGTGTGAGACAATTCAAAGGTAGATTGGACCATTGTGGGAATTCTTCCACTGAAGGGGATGTTGAGGGCAAAAAAATCAACATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTATCAAGTTCACCACAAAACCATTTGGGTGGTTCTTATGTCAGTGCAGCTTTGCCATGGATGAATAGAGCTCAAGGTACATGA 1146 0.4468 MSWIHSQICHSSDAINNPTSISPSSCSSTAPLSYSSEYKKQLPPPLSSSSGTRISPAIVFIFVILAIVFFISGLLHLLVRFLIRHMSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYEFEGLREEDGVSGSVAAEAGSFNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGVSGGSVRQFKGRLDHCGNSSTEGDVEGKKINIARKGESFSVSKIWQWSRKDKVSSSPQNHLGGSYVSAALPWMNRAQGT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02450 381 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vian1g02450 381 SMART ring_2 146 187 IPR001841 -
Vian1g02450 381 FunFam RING-H2 finger protein ATL46 108 193 - -
Vian1g02450 381 SUPERFAMILY RING/U-box 125 194 - -
Vian1g02450 381 CDD RING-H2_EL5-like 145 188 - -
Vian1g02450 381 Pfam Ring finger domain 145 188 IPR001841 -
Vian1g02450 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
Vian1g02450 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02450 Vian-Chr1 33889800 33890945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02450 48 354 C3H Transcription Factor Family AT2G18650 39.701 3.75e-55 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02450 - - gmx:100818135 585.489