Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02439 ATGAAATTTCAAGTGTTGCTTCTCCTGCTTTCCATCACCCTTTGTGTTGGATCTTCTCAAACTTCTGTTTATGATTGTGTCCTTCATATTCAATCTTCTTCAGCCTTGGTTAGTTCGAACTGTGAACTGTACAATTGTGGAGGGTTTATCAAAGGCTGTTGTGGACCGTATTTTGGTGATTACCTTTATGCCTTGGGGGTGAGGGCAAACCAAACTGGAAAAGTATTCTTGAATCCCTCAGAGCAAAAAAACTGTATGGCATCAATGGAAGCTTTTGACACAAAATTTACTTGTTCTGGAATGGAGAAGCTAACAAGTGGAACTGGTGGTTGCTCTGATTACACCATCACAGATGTTGTTAATCAGCTTGGGGACAGCCTTAGGAGTTTGGAGGAAGAATGCATGCCTTTGAGCACATATGGTAGGCCAAATGAAACTTGTACTAAATGTTTGAAAGCATGGGAGGATATCAGTGCAAAACCAGACACTACAAGAGGATCAGAGTTAGCAAATATCAGTTCTTATCTTTGTAGGTTTGCTGTGCTTGTCTCATTAACAAGCACAAGAATTTATGATAAGGAATCAATTCTAGAAGTTTATAAATGCCTTGGGGAACATGCCCTTTCTGGAGGATTAGCTTCAGCTAATGAAGAAGTCCAGGCTAGGGGCAATGCTAATATAAACTCAGGTCTCTGGATTGCCTTTGGCATAATAGGAGTTACAGTATTGGTGTTTCTTGGCGCACTAGCATTATTTGTCACAAGAATGAGAAGTGTTACATCAGTACAACATGAGTCTGATTCACCTTCACTGAAGATAACTTTGAAGGATGTTTATGTAGCAACAGACAATCTCAGTGCTTCAAATTTCATAGGCCAAGGCATAGCCGGAAAAGTGTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCACCAATGAATGTTACATGGAGACATTTGTCAGAGAAGTGAGAAGCCTTTCTCATGTTAGACATCAGAATTTAGTAGCTTTGCTGGGATACTGTGAAAATGAAGCTGAATGTTTTCTAGTGTATGAGTTATGCCACAATGGAAACCTCTCAGAATGGCTATTCGGCAATGGTAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCCATTGATAGTGCAAGAGGCCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATCGTTCACCGTGATATAAAGGCCAGAGATGTTGTTAGAGTTGGTGATATTTCAGAATTTGCTGATCCTAAACTCAAAGGGAAGTACTCAGTTGAAGCATTTGACATCGTACTAAAGCTAGCTTTGTCTTGCATAGGGCTCAAGCGCCAAAGGCCCTCTATAGAATATAAAGGACTGGAAAATGTTAAAGAGGAACATGGTCAAATATTACTTTGA 1419 0.401 MKFQVLLLLLSITLCVGSSQTSVYDCVLHIQSSSALVSSNCELYNCGGFIKGCCGPYFGDYLYALGVRANQTGKVFLNPSEQKNCMASMEAFDTKFTCSGMEKLTSGTGGCSDYTITDVVNQLGDSLRSLEEECMPLSTYGRPNETCTKCLKAWEDISAKPDTTRGSELANISSYLCRFAVLVSLTSTRIYDKESILEVYKCLGEHALSGGLASANEEVQARGNANINSGLWIAFGIIGVTVLVFLGALALFVTRMRSVTSVQHESDSPSLKITLKDVYVATDNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNECYMETFVREVRSLSHVRHQNLVALLGYCENEAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKARDVVRVGDISEFADPKLKGKYSVEAFDIVLKLALSCIGLKRQRPSIEYKGLENVKEEHGQILL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02439 472 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 222 411 - -
Vian1g02439 472 Gene3D Transferase(Phosphotransferase) domain 1 359 417 - -
Vian1g02439 472 FunFam Serine/threonine kinase protein 251 358 - -
Vian1g02439 472 Pfam Protein tyrosine and serine/threonine kinase 288 413 IPR001245 GO:0004672|GO:0006468
Vian1g02439 472 ProSiteProfiles Protein kinase domain profile. 285 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02439 472 Gene3D Phosphorylase Kinase; domain 1 250 358 - -
Vian1g02439 472 SUPERFAMILY Protein kinase-like (PK-like) 266 412 IPR011009 -
Vian1g02439 472 Pfam SPARK 25 159 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02439 Vian-Chr1 33488773 33491591 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02439 241 425 Receptor kinase-like Gene Family AT3G45420 35.025 2.34e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vian1g02439 PK_Tyr_Ser-Thr 3.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02439 - - gmx:100790181 645.966