Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02428 ATGGATGATTTTCTAATGGCCATCATCTTTTCCTCTCTCTCATCCATCTCAATGCGTTGCATCGAGCTGGCAATTCTTCGCAGAACTTGCGCAGTTCGACGAATCCAGGTTTACCATTCAATGCTGGAGCATAGCACAATCCATGTTCTTGTTTCCTTCTCGTATTCTCAAATTTTGGTTTTCCAGAACCTGTTTCGATTCCCTTCACTTTACCTCCGTTTTTCTGCTAAGAAGGGAGGACAAGGGAGTCATCCGTCTAAGTCACCACCGTCTCCGCCACCTCCATCCAAAACTTCATCCCCATCTTCATCGCCTTCGCCGTCATCTAAAGGTTTAAGTCCATCACCACCATCACCGTCATCTAAAGATTCAAGTCCATCACAACCACGACCGTCATCTGAAGATTCAAATCCATCATCACAATCTCAGTCATCTAAAGATTCAAGTCCATCTCCGCCCCTTCAATTGTTAGCATCGCCTCCACCACCCTCGCCATCGCCCTCTTCACCACCACCAAGTTCGCCTCCACATTCCCCGCCACCCCCTTCGCGCCAACAGTCACCCCCACCACCTCCGCGTCCGCGTTCCTTGCCATCCCCTTTGCCCCAACCTTCCCTGCCACCCCCTTCGCCCCAACCTTCCCTGCCACCCCCTTCGCCCCAACCTTCCCCGCCTCCCCCATTGCTCCCACCTTGGTCACCGCCACCAAATCGACTGCCAGAGCAAAATGACAATTCTTCCCCGCCACCACCATCAACACAGTTCCATGCTCCACCTCCCCTTTCTTGGCAAACTGCAGTCATGAATGATTCAAAAGGGGGAACTTCTAGGAATTCAAATTCAACAGGATCAAGCCCCCCGATCAATCATGACGTTAGTTCCGAAGCAAACTCAACGGTTTCTTCTCTCGCCCCCTCTTCCAGTGATAATTCAGAAAAATATGTTGCCTATACAGTCGCCGGACTTTTAGCTGTTGCCTTGGTTGCTATAGCTGTAGCTATTGCTTTGGCGTTTAAGAGGAAGAAATCGAGTGATGATTCTAACGGTGCACCCTACATGCCGCCCCTTGATATTCAAGTCAAATCAGGTGCTAATGGGCATTACTATGTACAGCAGCCTTCCCTTGCAAACAACTATTCAAATGGGAATGCGAAAGTGAACCATTTTGGATCTTCTTTAGACTTGGCTCAGCCCACAAATGGTCCCATGATTTTCACCTATGACATGGTTATGGAAATAACAAACGCATTTTCTAGTAAAAATGTTATAGGGGAAGGAGGCTTTGGATGTGTTTACAAAGGTTGCCTGCCAGATGGAAAAATAGTTGCAGTAAAGCAGCTTAGGGCTGGCAGTGGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGATATCATTAGCCGAGTACATCATCGATATTTGGTGTCATTAGTTGGTTATTGCGTGTCTGAACAGCAAAGAATTCTTATCTATCAATATGTTCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGTCAAAAGGCTAAAGATTGCAATAGGCGCTGCTAAGGGCCTTGCATATCTTCACGAGGACTGCAGCCAAAAGATAATTCACCGAGATATTAAGTCAGCAAACATACTCTTGGATGATGCTTTTGAGGCAAAGGTTGCAGATTTTGGACTTGCTAGGCTAGCTGATGCTGCCAATAGCCACGCTCGTCCACTTCTCCTTCGTGCAATGGAGACACGTAATTTTAGTGAATTAGTAGATCCAAGACTTGAAAAACGCTTTGTGGAGAGTGAAATGTCCAGAATGGTTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTTTCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAAAATGTGATCTTTCTAATGGGGTGAAATATGGTCAGAGCACAGTTTATGATTCTGGCCAATATGATAAAGATATAATGGTATTCAGAAGAATGGCGAATGGCACCTTTTTTGATTCTGATTTTAACACGTATAATAGTGAATATAGTCTTTCAAAACAGACGTCGGGAGGATCCGAGCAAAACTTGATGCAGCTTAGTTCTAGTGACGAATCAGACTCTACAGCTATCAACTGGAATATGAACAGTCCTGAAATAAAACGGTGA 2172 0.4627 MDDFLMAIIFSSLSSISMRCIELAILRRTCAVRRIQVYHSMLEHSTIHVLVSFSYSQILVFQNLFRFPSLYLRFSAKKGGQGSHPSKSPPSPPPPSKTSSPSSSPSPSSKGLSPSPPSPSSKDSSPSQPRPSSEDSNPSSQSQSSKDSSPSPPLQLLASPPPPSPSPSSPPPSSPPHSPPPPSRQQSPPPPPRPRSLPSPLPQPSLPPPSPQPSLPPPSPQPSPPPPLLPPWSPPPNRLPEQNDNSSPPPPSTQFHAPPPLSWQTAVMNDSKGGTSRNSNSTGSSPPINHDVSSEANSTVSSLAPSSSDNSEKYVAYTVAGLLAVALVAIAVAIALAFKRKKSSDDSNGAPYMPPLDIQVKSGANGHYYVQQPSLANNYSNGNAKVNHFGSSLDLAQPTNGPMIFTYDMVMEITNAFSSKNVIGEGGFGCVYKGCLPDGKIVAVKQLRAGSGQGEREFKAEVDIISRVHHRYLVSLVGYCVSEQQRILIYQYVPNGTLHHHLHGSGMPVLDWVKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAKVADFGLARLADAANSHARPLLLRAMETRNFSELVDPRLEKRFVESEMSRMVEAAAACVRHSAPKRPRMFQVVRALDTGDEKCDLSNGVKYGQSTVYDSGQYDKDIMVFRRMANGTFFDSDFNTYNSEYSLSKQTSGGSEQNLMQLSSSDESDSTAINWNMNSPEIKR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02428 723 MobiDBLite consensus disorder prediction 258 309 - -
Vian1g02428 723 MobiDBLite consensus disorder prediction 110 124 - -
Vian1g02428 723 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
Vian1g02428 723 SMART serkin_6 417 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02428 723 MobiDBLite consensus disorder prediction 125 153 - -
Vian1g02428 723 ProSiteProfiles Protein kinase domain profile. 417 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02428 723 MobiDBLite consensus disorder prediction 688 723 - -
Vian1g02428 723 MobiDBLite consensus disorder prediction 154 257 - -
Vian1g02428 723 Pfam Protein tyrosine and serine/threonine kinase 420 568 IPR001245 GO:0004672|GO:0006468
Vian1g02428 723 FunFam Protein kinase superfamily protein 493 565 - -
Vian1g02428 723 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 573 683 IPR047117 -
Vian1g02428 723 MobiDBLite consensus disorder prediction 77 309 - -
Vian1g02428 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Vian1g02428 723 FunFam Proline-rich receptor-like protein kinase PERK8 391 492 - -
Vian1g02428 723 Gene3D Phosphorylase Kinase; domain 1 381 492 - -
Vian1g02428 723 Gene3D Transferase(Phosphotransferase) domain 1 493 573 - -
Vian1g02428 723 Gene3D Transferase(Phosphotransferase) domain 1 574 649 - -
Vian1g02428 723 PRINTS Proline rich extensin signature 160 185 - -
Vian1g02428 723 PRINTS Proline rich extensin signature 85 106 - -
Vian1g02428 723 PRINTS Proline rich extensin signature 135 152 - -
Vian1g02428 723 PRINTS Proline rich extensin signature 113 129 - -
Vian1g02428 723 SUPERFAMILY Protein kinase-like (PK-like) 394 630 IPR011009 -
Vian1g02428 723 MobiDBLite consensus disorder prediction 86 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02428 Vian-Chr1 33215750 33221415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02428 316 692 Trihelix Transcription Factor Family AT1G70460 47.345 7.46e-131 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vian1g02428 PK_Tyr_Ser-Thr 2.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02428 - - vun:114178585 711.835