Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02427 ATGCTACTGATAACAATGATACACCACTCCGCAGCTGATAAGAACTTGTCGGCTACCATGTGCTTCAATTTGGGAGACTGTTATAAAGAGTGGCTTAGACCCCTTGTAGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAACATTTGTGTGGAGTCCAAAGAGGAAAAGGGTGAAGAATGCCACTTAGCTCCCATTTGCAGGGATAAATATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTAGCATTGTCTCTCTATTCTGGTGTGCATGGAGAAGTTGCCATATCACAACAATCAAGATGGCTTAACAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAGAAACTGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTGAAGCAAGAGGCCATATCTGCACAGAGCTACACCAGTCTGAACATCATTGAACATCTGCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAGCAACTTTAACTCCTAGTGTCCATCAGCCTGCAACAAAACAGTGCAACTCACATCCTAGCATTGAAGGACCCCCAAGGGGTTCTAATCCTTCCACTGAAGAACCATCGTTTGATTCAAAATTTGTTGGTTTGATTCCAGACGAATGTCTTAAACAATCAACTAAAATGTCTCCCATCTCCAAAACTAAAATGCCCAAGTACAGTAAAACTTCAGGGAAGCAGCAGAGAGGTTTGAGTTCTCATTGCAGCTATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAAGGTACCAAGCTAAAAATCTTGTCACTGAGAGAAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGATGCAGTTGACTATATAAAGGAATTACAAGCACAAGTGAATGAACTAAAAAACGAAGGCAGTGCTTTGGAAGTTCAGGACTGTATGAACACACCAAAATTGAGGAAGACAGCTGACAAAGAACAAGAAGGAACCAGAAGTAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAAGTACAAGCAGAAGTGCACTACATTGGCAAGAAAGATTTCTTAATTAAATTAAACTGTGAGCAGAAGCAAGGTAGATTCTCAAAGTTGATAGAATCTATACACTCAATTGGACTTCAGGTGACTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACGGTTAAGGATTGGAAACAGGCCAAAGTTCAAATTCGTGTAAAACCAGAAACATTCACGGCTTGTGGTATGATGATCATGCAATGTGAATTTGGTATTGAATTGACTTAA 1524 0.4049 MLLITMIHHSAADKNLSATMCFNLGDCYKEWLRPLVETNVWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNICVESKEEKGEECHLAPICRDKYLQHHVRTKACEALAQLPLALSLYSGVHGEVAISQQSRWLNKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSATLTPSVHQPATKQCNSHPSIEGPPRGSNPSTEEPSFDSKFVGLIPDECLKQSTKMSPISKTKMPKYSKTSGKQQRGLSSHCSYGEEDKSKLVKEPQKERYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVNELKNEGSALEVQDCMNTPKLRKTADKEQEGTRSNTLNQSSSDCTKKMQMEVQAEVHYIGKKDFLIKLNCEQKQGRFSKLIESIHSIGLQVTSANMTTFDDKVLNILTVKDWKQAKVQIRVKPETFTACGMMIMQCEFGIELT 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02427 507 Coils Coil 350 377 - -
Vian1g02427 507 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Vian1g02427 507 MobiDBLite consensus disorder prediction 217 248 - -
Vian1g02427 507 MobiDBLite consensus disorder prediction 293 309 - -
Vian1g02427 507 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 219 488 - -
Vian1g02427 507 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 30 170 IPR025610 -
Vian1g02427 507 MobiDBLite consensus disorder prediction 265 309 - -
Vian1g02427 507 MobiDBLite consensus disorder prediction 265 292 - -
Vian1g02427 507 Pfam Helix-loop-helix DNA-binding domain 318 361 IPR011598 GO:0046983
Vian1g02427 507 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 377 IPR036638 GO:0046983
Vian1g02427 507 Gene3D - 302 378 IPR036638 GO:0046983
Vian1g02427 507 MobiDBLite consensus disorder prediction 217 247 - -
Vian1g02427 507 MobiDBLite consensus disorder prediction 386 407 - -
Vian1g02427 507 SMART finulus 317 366 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02427 Vian-Chr1 33212104 33215676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02427 30 482 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 30.994 2.50e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g02427 bHLH-MYC_N 1.7e-14 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02427 - - gmx:100807261 687.567