Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02414 ATGTCAACACTGAACCATCTTTTCGATCTTCCAGAACAGATATGCTACGTAGAATGTGGATTCTGCACCACAATATTAATGCCAAACGAAGGTAGTTCAGAAGATGGTGCAGCCTGCAAGACTTTGAAGAACTATAGTTCATCCGTAGTAACCTATTCTGATTGTGAGGAAGAGAACACGCCTCAAACTTCCAGCGTTGTGAATAAACCCCCAGAGAAGAGACAGAGGACACCATCTGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAAGCTGAAAACCCTAAAATGGCCCACAGAGAAGCTTTCAGCACTGCGGCAAAAAATTGGGCCAATTTCCCCCCTTCTCACTGCAAAGGAGAAGCAGACAGCTGTAAAATTCTGCATCTGGATTGCCATGTAGAGTCTCCCAATGCTTCCCAGGTGACAACCCTAAAAATTTTTAATTTTTCCACCATATCCTCGTTGCTGGAATCCAACATAACCGACCCGGAGCTCCTCTTCAAGCTCTCGCTACGCGTCGCCATTGACGAGCTCTCCAAGCTCTCCAACTTCCCTTCCAAGCTCCGTGCCAATGCAGAACACGATGCGCGTCTGCAGAAGGCGATCAACGTCTACAGTTCCGTCATCGGTGACGCGCTGGACCGCCTCAACGACTCCATCTCCGCGCTCGGAACCGTCACCGGAAGGATTGTTTCTTCGACGAGCGTCAACAATGTGGAGATGTAG 735 0.4789 MSTLNHLFDLPEQICYVECGFCTTILMPNEGSSEDGAACKTLKNYSSSVVTYSDCEEENTPQTSSVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHCKGEADSCKILHLDCHVESPNASQVTTLKIFNFSTISSLLESNITDPELLFKLSLRVAIDELSKLSNFPSKLRANAEHDARLQKAINVYSSVIGDALDRLNDSISALGTVTGRIVSSTSVNNVEM 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02414 244 CDD HMG-box_SF 76 118 - -
Vian1g02414 244 PANTHER PROTEIN YABBY 6-RELATED 46 125 IPR006780 GO:0007275
Vian1g02414 244 FunFam Axial regulator YABBY 4 64 129 - -
Vian1g02414 244 SUPERFAMILY HMG-box 61 118 IPR036910 -
Vian1g02414 244 MobiDBLite consensus disorder prediction 56 72 - -
Vian1g02414 244 MobiDBLite consensus disorder prediction 56 77 - -
Vian1g02414 244 Gene3D High mobility group box domain 66 128 IPR036910 -
Vian1g02414 244 Gene3D Invertase/pectin methylesterase inhibitor family protein 142 243 IPR035513 -
Vian1g02414 244 Pfam YABBY protein 37 120 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02414 Vian-Chr1 33000900 33008289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02414 2 127 C2C2-YABBY Transcription Factor Family AT1G23420 44.199 1.62e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vian1g02414 YABBY 1.8e-33 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02414 K25796 - gmx:100807136 195.667