LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g02405	ATGGAAGCAGAAATCCCAGCTGCAGCTGTGAAAGAATCTGAGCAACAGAAGTTTGCTCTACCTGTGGATTCTGAAAACAAGGCCACCGAGTTCAGATTGTTTTCCGTAGCTAAACCCCACATGAGATCTTTTCACCTATCATGGATCTCTTTTTTCTCATGCTTTGTGTCTAGCTTTGCTGCTCCACCCCTCCTTCCCATAATCCGGGACAACCTGAACCTCACAGCCACTGACATTGGAAATGCTGGTGTTGCATCGGTTTCCGGTGCAGTATTAGCAAGAATTGCAATGGGAACAGCTTGTGACTTAGTTGGACCGCGCCTGGCCTCTGCATCACTCATCCTCCTCACAGCACCATTTGTGTACTTCACCTCCATCATCAACTCACCCACCTCGTACCTCCTTGTCCGTTTCTTCACCGGCTTCTCCCTGGCCACCTTTGTCTCCACACAGTTCTGGATGAGCTCTATGTTCTCTGCTCCGGTGGTCGGTTCGGCAAACGGATTTTCCGGCGGATGGGGCAACCTTGGAGGAGGAGCCACCCAACTGATCATGCCCCTTGTATTCTCCCTCATCCGTGACATTGGCGCTACCAAATTCACAGCATGGAGGATTGCATTCTTTGTCCCTGCCATGTTCCAGATGCTCACGGCATTTTCAATCCTGATATTTGGGCAGGACATGCCCAATGGAAACTTCCAGCGGTTGAAGAAGTCAGGGGAGAAAGCAAAAGACGAATTCTCAAGAGTGGTGTATCATGGGATCAGTAACTACAGAGGGTGGATTCTGGCGTTGACTTACGGCTACTGCTTTGGGGTGGAGTTGACCATAGACAACATCATAGCTGAATACTTCTATGACAGGTTTAATCTGAAACTCCACACTGCAGGAATCATTGCTGCAAGCTTTGGGTTGGCTAACTTGTTTTCTAGACCTGGTGGGGGTTATATATCAGATGTAATGGGAAAGAGGTTTGGCATGAGAGGGAGGTTGTGGGCTTTATGGCTGTGCCAAACCTTGGCTGGTGTCTTCTGCATCATCCTTGGCCTTGTCGGATCTTTAAGTGTATCCGTCCTTATTATGATCATATTCTCTATCTTTGTCCAAGCCGCATGTGGAATGACCTTTGGGATTGTTCCCTTTGTCTCAAGAAGGTCATTGGGGGTGATATCTGGAATGACAGGAGGAGGAGGCAATGTGGGTGCAGTTGTGACCCAGCTAATTTTCTTCAAAGGATCCAAGTTTTCAAAAGAAAGAGGAATAACTCTAATGGGAGTGATGATCATAATATGCACTCTGCCAATATGTTTAATCTATTTTCCACAATGGGGTGGAATGTTTTGTGGTCCCTCGTCTAAGAAGATCACGGAAGAAGATTACTACTTAGCTGAGTGGAACTCAAAGGAGAAGGAGAAAGGGTCCCATCATGCAAGCTTGAAATTTGCCAATAACAGCAAAAGTGAAAGAGGCAAAAAACTGAATGCATCAACAGAGCCTTCCGAGGAGATCTAA	1512	0.4689	MEAEIPAAAVKESEQQKFALPVDSENKATEFRLFSVAKPHMRSFHLSWISFFSCFVSSFAAPPLLPIIRDNLNLTATDIGNAGVASVSGAVLARIAMGTACDLVGPRLASASLILLTAPFVYFTSIINSPTSYLLVRFFTGFSLATFVSTQFWMSSMFSAPVVGSANGFSGGWGNLGGGATQLIMPLVFSLIRDIGATKFTAWRIAFFVPAMFQMLTAFSILIFGQDMPNGNFQRLKKSGEKAKDEFSRVVYHGISNYRGWILALTYGYCFGVELTIDNIIAEYFYDRFNLKLHTAGIIAASFGLANLFSRPGGGYISDVMGKRFGMRGRLWALWLCQTLAGVFCIILGLVGSLSVSVLIMIIFSIFVQAACGMTFGIVPFVSRRSLGVISGMTGGGGNVGAVVTQLIFFKGSKFSKERGITLMGVMIIICTLPICLIYFPQWGGMFCGPSSKKITEEDYYLAEWNSKEKEKGSHHASLKFANNSKSERGKKLNASTEPSEEI	503

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g02405	503	CDD	MFS_NRT2_like	44	437	IPR044772	GO:0015112
	Vian1g02405	503	Pfam	Major Facilitator Superfamily	48	404	IPR011701	GO:0022857\|GO:0055085
	Vian1g02405	503	Gene3D	MFS general substrate transporter like domains	243	444	IPR036259	-
	Vian1g02405	503	MobiDBLite	consensus disorder prediction	485	503	-	-
	Vian1g02405	503	SUPERFAMILY	MFS general substrate transporter	35	439	IPR036259	-
	Vian1g02405	503	Gene3D	MFS general substrate transporter like domains	36	234	IPR036259	-
	Vian1g02405	503	FunFam	Nitrate transporter 2.1	244	445	-	-
	Vian1g02405	503	PANTHER	HIGH-AFFINITY NITRATE TRANSPORTER 2.3	11	492	IPR044772	GO:0015112
	Vian1g02405	503	MobiDBLite	consensus disorder prediction	468	503	-	-
	Vian1g02405	503	FunFam	High affinity nitrate transporter 2.5	36	232	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g02405	Vian-Chr1	32761450	32763719	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g02405	16	500	Inorganic Solute Cotransporters	AT1G12940	74.433	0.0	772

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g02405	K02575		-	gmx:100787888	886.715

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