Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02399 ATGGCTTCTCTCACTCCTCTTCTTCCATTTTTTTTCCCTTTTCTGGCAACTTCTTTTGTCACAGTTTTTGCCTTTCAGGTCTCAATCAAACCTACACATTTGTCTCCTTTAAGTTGCCCTGCTAAGATCCTAACATGTAATGCCTCCCTCTACCACATATCCCATAATCTCACCATTCAGCAAATTGCCTCTTTTTACTCGGTTACTTCTTCCCATATCACACCTATAAAACATGGCACCAAACAAGACTACCTCATCACAGTACCTTGTTCATGCAAACATTCGAGTGACCTTAGCGGATATTTCTATGACACCACCTACAAAGTAAGGCCACATGACACTTTTGTGAATATTTCAAACCTCGTTTTCAGTGGCCAAGCTTGGCCAGTTAATGGTACATTGAATCCAGATGAAAATTTAGCAATACACCTTCCATGTGGGTGCTCAGAAAGTGACTCTCAAATTGTTGTCACCTATACAGTTCAGCCAGATGATACACCAACAATGATTGTTAATCTGCTAAATGCTTCACTGGCTGACATAATGAGCATGAACAAGGTTCTGGCTCCGAACTTTAAATTCATAGACGCTGGTTGGGTTCTGTTTGTTCCCAAGGGATCCAAAGGGCTATTACATAGTACTGCTGCTGTCAATGAAAAGAAACTTAAGTGGACAACAACAATAATTGGTATCTTAGCGGGAGTGACATTCCTTTCGGTTACTACAACCATCATTCTCATTGTCAGGGTAAATAAAGTGAATCAAATGATCAGTGAAGATTCACACCTTATCTCCAGAAGATCAATAGCCAATAGAACTATTTCCTCAAAGTATAACTTTCAAAAGGAATGTTTAGAAGATGTAATTTCATTAGAATCAGAAAGACCAATAGTATACAACCTTGAGAAGATTGAAGAGGCTACGAATAACTTCGATGAAAGTCGAAGAATAGGAAGTGGTGGATACGGAAGTGTTTATTTTGGAGTATTAGGGAACAAGGTGGAGCTGTTGGGATATGCAAACGGAGAAGATGACCTCTATTTGGTGTATGAGTACGTTCCAAATGGATCTCTCAGTGATCATCTTCATAATCCATTACTAAAAGGGAACCAGCCTCTTTCTTGGAGTGTTAGGGTTCAAATTGCACTGGATGCTGCAAAAGGTCTTGAATATATACATGACTATACAAAAGCACGATATGTGCACCGTGACATAAAGAGTAGCAATATTCTACTTAATGACAAGTTCAGAGCAAAGGTTGGGGATTTTGGACTTGCAAAGCTGGTAGACAGAACCGATGATGAAAATTTTATAGCAACCAGACTTGTAGGAACACCAGGCTACCTTCCACCAGAGTCTCTGAAGGAGCTTCAAGTGACCCCAAAAACCGATGTGTTTGCGTTTGGAGTGGTGCTTTCAGAGCTGTTAACAGGGAAACGAGCATTATTCCGAGAAAGCCAAGATGAGATTAAAATGAAATCACTCATTAGTGTTGTTAATAAAATATTCCAAGATGATGAACCAGAGATTGCCTTAGAAGATGCCATAGATAAGAATCTGGAAGCAAGCTATCGGATGGAAGATGTCTACAAGTTAGGTGCAAATCCCAACAACCACCACTGTCGGACCAAGACCAGTGGGGAACCGCACCGACGTATCCCGATGGGTACTGGAAGGAATCTGGTGAGACCCGGGTGCGCGGGGGAGCCACTAGCTGGGTATCCTCAACGACGATGGCAGCGGGGGAGGAAGAACGCGCGGCCTCCTACGGCTTGTGTAAAGTACGCAAATGATATTATGGGGTTGCATGGGTGGATTATAAGAATGGTGAAGGGTTACATGCTAATTAAGATGGCAGAAATAGCTGAGTGGTGCTTGCAAGAAGATCCAATAGAGAGGCCCGAAATGAGGGATATAATTGGGGCACTGTCTCAGATTGTGATATCCTCAATAGAGTGGGAAGCATCCCTATGTGGAAATAGCCAGGTCTTCAGCGGGCTGTACAGTGGAAGATGA 2016 0.4226 MASLTPLLPFFFPFLATSFVTVFAFQVSIKPTHLSPLSCPAKILTCNASLYHISHNLTIQQIASFYSVTSSHITPIKHGTKQDYLITVPCSCKHSSDLSGYFYDTTYKVRPHDTFVNISNLVFSGQAWPVNGTLNPDENLAIHLPCGCSESDSQIVVTYTVQPDDTPTMIVNLLNASLADIMSMNKVLAPNFKFIDAGWVLFVPKGSKGLLHSTAAVNEKKLKWTTTIIGILAGVTFLSVTTTIILIVRVNKVNQMISEDSHLISRRSIANRTISSKYNFQKECLEDVISLESERPIVYNLEKIEEATNNFDESRRIGSGGYGSVYFGVLGNKVELLGYANGEDDLYLVYEYVPNGSLSDHLHNPLLKGNQPLSWSVRVQIALDAAKGLEYIHDYTKARYVHRDIKSSNILLNDKFRAKVGDFGLAKLVDRTDDENFIATRLVGTPGYLPPESLKELQVTPKTDVFAFGVVLSELLTGKRALFRESQDEIKMKSLISVVNKIFQDDEPEIALEDAIDKNLEASYRMEDVYKLGANPNNHHCRTKTSGEPHRRIPMGTGRNLVRPGCAGEPLAGYPQRRWQRGRKNARPPTACVKYANDIMGLHGWIIRMVKGYMLIKMAEIAEWCLQEDPIERPEMRDIIGALSQIVISSIEWEASLCGNSQVFSGLYSGR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02399 671 SUPERFAMILY Protein kinase-like (PK-like) 295 643 IPR011009 -
Vian1g02399 671 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 615 665 IPR044812 GO:0019199|GO:0045087
Vian1g02399 671 Pfam LysM domain 159 204 IPR018392 -
Vian1g02399 671 CDD LysM 157 203 IPR018392 -
Vian1g02399 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 400 412 IPR008271 GO:0004672|GO:0006468
Vian1g02399 671 Gene3D LysM domain 150 211 IPR036779 -
Vian1g02399 671 SUPERFAMILY LysM domain 157 204 IPR036779 -
Vian1g02399 671 Gene3D Transferase(Phosphotransferase) domain 1 353 557 - -
Vian1g02399 671 FunFam PTI1-like tyrosine-protein kinase 3 353 550 - -
Vian1g02399 671 Pfam Protein kinase domain 334 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02399 671 Gene3D Phosphorylase Kinase; domain 1 290 335 - -
Vian1g02399 671 ProSiteProfiles Protein kinase domain profile. 226 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02399 671 SMART serkin_6 311 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g02399 671 MobiDBLite consensus disorder prediction 535 559 - -
Vian1g02399 671 ProSiteProfiles LysM domain profile. 157 203 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02399 Vian-Chr1 32561632 32566714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02399 615 671 Receptor kinase-like Gene Family AT1G51940 59.649 1.93e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vian1g02399 Pkinase 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02399 - - gmx:100791718 837.025