LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g02377	ATGGGAGAAATCCCACCAAGGTGGAAAGGAGTTTGTCAAGTGGGAGAGCACTTCAACTCCACCAACTGTAACAAGAAGATAATAGGTGCTAGATGGTTTCTGAAAGGAATAACTGATCAGACTAAGAAGCTTCTTCAAGGAAACAACACCAATGAATATCTCTCAGCAAGAGATGCAATTGGCCATGGTACTCACACAGCTTCCACAGCAGCTGGTTACTTTGTTGGAAATGCAAACTACAGAGGACTTGCTTCTGGTTTAGCCAGAGGAGGAGCACCTTTGGCTCACTTAGCTATCTACAAAACTTGCTGGGACTTTCCAATTGGAGAGTGTTCTGGTGCTGACATTTTGAAAGCTTTTGATAAGGCTATACATGATGGGGTTGATGTTTTAACTGTTTCTCTTGGCTTTTCCATTCCCTTGTTCTCATATGTTGATCATCGTGATGTAATAGCAATTGGTTCTTTTCATGCAACTGCTAAGGGAATCACAGTCGTTTGTTCTGCTGGAAATTCTGGTCCTCTCTCGCAAACCATTACAAATACTGCACCATGGATCATCACAGTTGGAGCTACCACCATAGATAGGGCCTTTCCAGCTGCCATCACTCTCGGAAATAACCGCACTCTGTGGGGACAGTCCATTGATACTGGAAAACATAATCTTGAATCTGTTGGGCTCACATATTCTGAACGTATTGCTCTAGACCCATCAGATAATTTGGCCAAGGATTGCCAATCTGGAAGTCTAAATGCAACTATGACAGAAGGAAAAATTGTTCTATGCTTTTCCGTATCAGATCAGCAGGACATTGTTTCTGCATCAGTTACAGTGAAGGAAGCTGGAGGAGTTGGACTAGTATATGCACAATATCATGAAGATGGACTCAATCAATGTGGTTTGTTTCCATGTATCAAGGTAGATTATGAAACGGGGACTCAAATATTAACCTATATTAGAAGATCAAGGTTTCCAACAGCAAGCCTGAGTTTTCCCAAGACTGTTATTGGAAAATGGACATCACCACGAGTTGCGTCTTTCTCGTCTAGAGGACCCAGTAGCTTGTCTCCGACTGTGCTAAAGCCTGACATAGCTGCTCCAGGTGTGGATATTTTGGCTGCATTTCCTTCAAAGGGAACTACAAAGAACAGTGGATTTTCATTCTTGTCTGGAACTTCAATGTCTTGTCCTCATGTGGCAGGAATAGTAGCTGTAATGAAATCCAAGTACCCAACTTGGTCACCAGCAGCCATAAGATCAGCTTTGGTAACAACAGCACACCAAAGTGGAACAGATGGAAACGTTATATCTGAAGAGGGTTCCACACACAAGGCAGCAGACCCTTTTGATATTGGGGGTGGACAGATGGATCCCAAGAAAGCAATGGTTCCAGGACTCATATATGACATAACCACAGAGGATTATGTCCAATTCCTATGTTCCATGGATCACAGTATTGCAACCATTCGAAAAGTAATCAAGACCAGCACAAGGTGTAAGAAAGAAAAACACCAAGCCCTGAACCTCAACCTTCCTTCCATATCAGTTCCAAACTTGAAGAAGACTGCAACAGTAACGAGAAGAGTGACAAACGTGGGAAACGTAACTGCGATCTACAAAGTTCTAGTGAAGGTTCCATATGGCATAAAAGTGAGAGTTGAACCTCAAACTTTAAGTTTCAATTCAGACACACAAGTCCTTAGCTTCAATGTCAGTTTCCTGTCAACTCAAAAGTTTAGTGGAGATTACAAATTTGGTAGCCTCACATGGACAGATGGCAAGCATTCTGTGAGGACCCCGATTGTTGTCAGAACCAATGCAGTTTGA	1827	0.4253	MGEIPPRWKGVCQVGEHFNSTNCNKKIIGARWFLKGITDQTKKLLQGNNTNEYLSARDAIGHGTHTASTAAGYFVGNANYRGLASGLARGGAPLAHLAIYKTCWDFPIGECSGADILKAFDKAIHDGVDVLTVSLGFSIPLFSYVDHRDVIAIGSFHATAKGITVVCSAGNSGPLSQTITNTAPWIITVGATTIDRAFPAAITLGNNRTLWGQSIDTGKHNLESVGLTYSERIALDPSDNLAKDCQSGSLNATMTEGKIVLCFSVSDQQDIVSASVTVKEAGGVGLVYAQYHEDGLNQCGLFPCIKVDYETGTQILTYIRRSRFPTASLSFPKTVIGKWTSPRVASFSSRGPSSLSPTVLKPDIAAPGVDILAAFPSKGTTKNSGFSFLSGTSMSCPHVAGIVAVMKSKYPTWSPAAIRSALVTTAHQSGTDGNVISEEGSTHKAADPFDIGGGQMDPKKAMVPGLIYDITTEDYVQFLCSMDHSIATIRKVIKTSTRCKKEKHQALNLNLPSISVPNLKKTATVTRRVTNVGNVTAIYKVLVKVPYGIKVRVEPQTLSFNSDTQVLSFNVSFLSTQKFSGDYKFGSLTWTDGKHSVRTPIVVRTNAV	608

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g02377	608	SUPERFAMILY	Subtilisin-like	19	462	IPR036852	GO:0004252\|GO:0006508
	Vian1g02377	608	Pfam	Subtilase family	50	429	IPR000209	GO:0006508\|GO:0008236
	Vian1g02377	608	PRINTS	Subtilisin serine protease family (S8) signature	58	71	IPR015500	-
	Vian1g02377	608	PRINTS	Subtilisin serine protease family (S8) signature	390	406	IPR015500	-
	Vian1g02377	608	Gene3D	-	479	606	-	-
	Vian1g02377	608	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	1	603	IPR045051	-
	Vian1g02377	608	Gene3D	-	195	336	-	-
	Vian1g02377	608	FunFam	subtilisin-like protease SBT1.5	195	336	-	-
	Vian1g02377	608	FunFam	Subtilisin-like protease SBT1.5	1	208	-	-
	Vian1g02377	608	CDD	Peptidases_S8_3	1	427	IPR034197	-
	Vian1g02377	608	CDD	PA_subtilisin_like	202	329	-	-
	Vian1g02377	608	Gene3D	Peptidase S8/S53 domain	1	475	IPR036852	GO:0004252\|GO:0006508
	Vian1g02377	608	FunFam	Subtilisin-like protease SBT1.5	479	606	-	-
	Vian1g02377	608	Pfam	Fibronectin type-III domain	508	603	IPR041469	-
	Vian1g02377	608	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	462	-	-
	Vian1g02377	608	ProSitePatterns	Serine proteases, subtilase family, serine active site.	391	401	IPR023828	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g02377	Vian-Chr1	31792851	31795837	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g02377	1	606	Subtilisin-like Serine Gene Family	AT4G10540	49.346	0.0	592

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g02377	-		-	gmx:100792709	1066.22