Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02375 ATGGAGGAGAGGAAGTATGTTTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAGGAAAGAAGTAATGCTGATGCTGACATCTTCATCAAGTCGGATGGTGTCAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTCGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCCGGCGCTCGTCGTGGTTGTGGTAGTGGTGTTGCCGGTGCCAACAATGAAAAGGAGAAGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAGGCTCTATGTGGTCACATGGCTAGTCACTCCGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGACACCGAGACCTGTCCTCCATCTCATCCAAGGAGATCCAAGAGAATGAGGGTCAAGACCATTAACCTTTCCAATCACCCTTTTCCTTCCTCTTCTCCTTCTTCTTATTCTGTTCCGTTGCCCAATGGCTCTTCACCCGTTTCAGAGGTAGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGATGCTGTCCAGAGATTCTAGTTTCAAGGGTCGTTTTGCTTCGGTTACCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCATCCTCTCCTGATATTCGGATTGGTGTCAGCAATGGTAATTATAACTTTGTCTCTAATAATGCTTATGATCTTGTTGACAACAAGTTGCTTAGGGTTAATGATATCAAGTTAAAGTCTGTTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAATGGTTGACTCAGATGTCTCCAATGATCAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTGGTGAAGAAGTCAGTGATGGAGGAGTTGGATTATGATGGAACAGATGGAACTGCAAGGAAGTTTGATTCCAGAAAGAGAAGCAACTATGATTCTCTTGATAACAATCCAGTTGGTGGTTCTAGCAAGAAGATAGCAAATGGTTTTGGTAATGAAGTATATGGGAATAGCACAAAAGGTTGGAAATACGAGTCTTTGGAGGGTGAAAGGGACTATGATTCTTTTGATTATTCCATTGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCCAGGTCTCATAACAGTAAGGCCCTCAATGGGAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGACACAAAAGATCTCATTTCATTGGTGGTTCTGAAGAAAACACTCTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCCTGATTGATCTAAATCTACCTGCTCCTGTTGACGAATAA 1509 0.4327 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADIFIKSDGVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGARRGCGSGVAGANNEKEKFCKECGKGFPSLKALCGHMASHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCPPSHPRRSKRMRVKTINLSNHPFPSSSPSSYSVPLPNGSSPVSEVEQEQEEVARCLMMLSRDSSFKGRFASVTECSDNNSVVLEAKSSSPDIRIGVSNGNYNFVSNNAYDLVDNKLLRVNDIKLKSVEFGASDNSGSRYFKHGPKTKMVDSDVSNDQFKWPKVGDKSSKYTATLVKKSVMEELDYDGTDGTARKFDSRKRSNYDSLDNNPVGGSSKKIANGFGNEVYGNSTKGWKYESLEGERDYDSFDYSIEESHENSSETESYPAPRSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02375 502 MobiDBLite consensus disorder prediction 142 161 - -
Vian1g02375 502 MobiDBLite consensus disorder prediction 337 372 - -
Vian1g02375 502 Gene3D Classic Zinc Finger 1 53 - -
Vian1g02375 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 447 469 IPR013087 -
Vian1g02375 502 ProSitePatterns Zinc finger C2H2 type domain signature. 449 469 IPR013087 -
Vian1g02375 502 MobiDBLite consensus disorder prediction 411 429 - -
Vian1g02375 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vian1g02375 502 MobiDBLite consensus disorder prediction 403 443 - -
Vian1g02375 502 SUPERFAMILY beta-beta-alpha zinc fingers 4 120 IPR036236 -
Vian1g02375 502 MobiDBLite consensus disorder prediction 168 191 - -
Vian1g02375 502 SMART c2h2final6 447 469 IPR013087 -
Vian1g02375 502 SMART c2h2final6 6 28 IPR013087 -
Vian1g02375 502 SMART c2h2final6 98 120 IPR013087 -
Vian1g02375 502 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vian1g02375 502 MobiDBLite consensus disorder prediction 337 353 - -
Vian1g02375 502 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vian1g02375 502 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 502 - -
Vian1g02375 502 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vian1g02375 502 Pfam C2H2-type zinc finger 6 30 - -
Vian1g02375 502 Pfam C2H2-type zinc finger 447 469 - -
Vian1g02375 502 Pfam C2H2-type zinc finger 100 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02375 Vian-Chr1 31016798 31018306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02375 1 502 C2H2 Transcription Factor Family AT1G26610 41.061 9.18e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g02375 zf-C2H2_6 5.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02375 - - vun:114177115 798.89