Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02366 ATGGTTGGCGGTGGAAATGGAGAGGGAGCTCCACCCTCGACGGCGGTGCGTCCCAGAAGTGATCTCCGCCCACGCGCAACCGCAGAGAGCGTTTTCAACGGCGGGGACGCTGCGGGGTATAGCCCCGGTCCCATGACTCTGCTTTCTAGCCTGTTCGGCGACGGCGATGAGTATAAGTCGTTCTCGGAGTTCCTCGCCGGCGCTATGATGGACCCCACCCCTCCTCGGTTTTTTTCCGATTCACCTTCTCAACAGCAAATGCTAGCACAGGTCACATCCCACTCCAATGTGCAAATTCAAGCTGAAGATCCATTCTCTGCTGCAGTTCCTGCTACCTCATTGACACAGGTTCCTACAACTATTTCCACCACTGTGTCAGCTTCTGGGGTGACAGAATCCTTTGGTTTTTCTCACTCTGATAAAAAATTGCACTCTTCTGCTGTCATTGTTGACAAGCCCAATGATGATGGCTACAACTGGAGGAAGTATGGGCAGAAACATGTAAAAGGTAGTGACTTATCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTTGAGCGATCTCTTGAGGGTCATGTAACTGCAATTATCTACAAAGGAGAGCACAACCATCAACGTAAGACGACAAAAGGCACCCTAACATCAACTGAGAATTCAGATAAGTTGAAAGAAGAGAGGAGTTCTCACTCGGTGTCTCAGATGGATCTAGAATCTGGAACGAGTGACAGTGAGGAAGTAGGTGATCATGAAACTGAAATGGATGAGAAAAATGATGAACCTGATCCAAAGAGGAGAAACACAGAAGGCAGACTCCAGGATCCAGCCTCTTTGCATAGAACTGTGGCAGAGCCTAGAATCATTGTGCAAACAACAAGTGAAGTGGATCTCTTGGATGATGGATATAGGTGGCGCAAATATGGGCAGAAAGTTGTCAAGGGCAACCCCTATCCAAGGAGCTATTACAAGTGCACCACCCCAGGTTGCAATGTTCGGAAGCATGTTGAGAGGGCTTCGACGGATCCTAAAGCTGTAATAACAACATATGAAGGAAAACATAATCATGATGTACCAGCAGCTAAGACTAATAGTCACACACTTGCCAATAATAGTTCAACACAGCTTAAAGCACAAAATGCCATGCCTGATGAGAAGATGCATAGTTTCAGGGGCAGTGAGCAGCGACCTGTGGCAAGTCTAAGACTAAAGGAAGAGAAGATAACTTAG 1242 0.4694 MVGGGNGEGAPPSTAVRPRSDLRPRATAESVFNGGDAAGYSPGPMTLLSSLFGDGDEYKSFSEFLAGAMMDPTPPRFFSDSPSQQQMLAQVTSHSNVQIQAEDPFSAAVPATSLTQVPTTISTTVSASGVTESFGFSHSDKKLHSSAVIVDKPNDDGYNWRKYGQKHVKGSDLSRSYYKCTHPNCPVKKKLERSLEGHVTAIIYKGEHNHQRKTTKGTLTSTENSDKLKEERSSHSVSQMDLESGTSDSEEVGDHETEMDEKNDEPDPKRRNTEGRLQDPASLHRTVAEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTLANNSSTQLKAQNAMPDEKMHSFRGSEQRPVASLRLKEEKIT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02366 413 SMART WRKY_cls 303 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 SMART WRKY_cls 154 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 MobiDBLite consensus disorder prediction 262 278 - -
Vian1g02366 413 Gene3D WRKY domain 142 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 Gene3D WRKY domain 288 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 SUPERFAMILY WRKY DNA-binding domain 152 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 MobiDBLite consensus disorder prediction 363 413 - -
Vian1g02366 413 ProSiteProfiles WRKY domain profile. 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 MobiDBLite consensus disorder prediction 365 384 - -
Vian1g02366 413 SUPERFAMILY WRKY DNA-binding domain 295 363 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 Pfam WRKY DNA -binding domain 304 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 ProSiteProfiles WRKY domain profile. 298 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g02366 413 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 383 IPR044810 GO:0003700
Vian1g02366 413 FunFam WRKY transcription factor 33 290 356 - -
Vian1g02366 413 FunFam WRKY transcription factor 142 214 - -
Vian1g02366 413 MobiDBLite consensus disorder prediction 391 413 - -
Vian1g02366 413 MobiDBLite consensus disorder prediction 223 237 - -
Vian1g02366 413 MobiDBLite consensus disorder prediction 202 284 - -
Vian1g02366 413 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02366 Vian-Chr1 30782819 30784857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02366 13 413 WRKY Transcription Factor Family AT2G03340 46.422 3.55e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g02366 WRKY 9.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02366 - - vun:114179749 706.827